View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_61 (Length: 236)
Name: NF16931_low_61
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40943690 - 40943470
Alignment:
| Q |
1 |
atttttagctaatgttttaagattttcttgattgaaatggatgatatcatgaagtgaatattcgacttgttttgcagtcaccaaggagggactgttgtag |
100 |
Q |
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| T |
40943690 |
atttttagctaatgttttaagattttcttgattgaaatggatgatattatgaagtgaatattcgacttgttttgcagtcaccaaggagggactgttgtag |
40943591 |
T |
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| Q |
101 |
agttctgccatcacgtaagagctcaactctattcttatgggtaggcaactgtcgacagggtgaagttactgaattgtagctgcgacggacatatatggag |
200 |
Q |
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| T |
40943590 |
agttctgccatcacgtaagagctcaactctattcttatgggtaggcaactgtcgacagggtgaagttactgaattgtagctgcgacggacatatatggag |
40943491 |
T |
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| Q |
201 |
catactggaaatggagcttca |
221 |
Q |
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| T |
40943490 |
catactggaaatggagcttca |
40943470 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 22775147 - 22775107
Alignment:
| Q |
65 |
acttgttttgcagtcaccaaggagggactgttgtagagttc |
105 |
Q |
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| T |
22775147 |
acttgttttgaagtcaccaaggagggattgctgtagagttc |
22775107 |
T |
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