View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_66 (Length: 205)

Name: NF16931_low_66
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_66
NF16931_low_66
[»] chr1 (13 HSPs)
chr1 (19-185)||(9257570-9257736)
chr1 (24-185)||(9299979-9300140)
chr1 (18-174)||(8926830-8926986)
chr1 (21-174)||(8939259-8939412)
chr1 (26-174)||(9364284-9364432)
chr1 (26-174)||(9337425-9337573)
chr1 (19-174)||(9242612-9242767)
chr1 (18-174)||(8962183-8962339)
chr1 (21-119)||(9466861-9466959)
chr1 (24-170)||(9377603-9377749)
chr1 (24-166)||(9236488-9236630)
chr1 (18-76)||(8861971-8862029)
chr1 (18-136)||(8979311-8979429)
[»] chr3 (1 HSPs)
chr3 (17-174)||(9171375-9171532)
[»] scaffold0690 (1 HSPs)
scaffold0690 (19-172)||(1486-1639)
[»] chr6 (1 HSPs)
chr6 (19-172)||(15910467-15910620)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 9257736 - 9257570
Alignment:
Q  19 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 118  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9257736 cagaaggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatt 9257637  T
Q  119 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagc 185  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  9257636 tcatcgtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagc 9257570  T

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Target: chr1; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 9299979 - 9300140
Alignment:
Q  24 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 123  Q
    |||||||| ||||||||||||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  9299979 ggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatc 9300078  T
Q  124 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagc 185  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  9300079 gtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagc 9300140  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 8926830 - 8926986
Alignment:
Q  18 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat 117  Q
    |||||||||||||| |  |||||||||||||| ||||||||| |||| |||||||| ||| | |||| ||| || |||||| ||||||||||||||||||    
T  8926830 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat 8926929  T
Q  118 ttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    || |||||||||| || |||||||| ||||| |||| ||||||||| || |||||||    
T  8926930 tttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcattt 8926986  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 8939259 - 8939412
Alignment:
Q  21 gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc 120  Q
    ||||||||||| |  |||||||||||||||||||||||| |||| ||||| || ||| | |||| |||||| |||||| ||||||||||||||||||||     
T  8939259 gagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggatttt 8939358  T
Q  121 atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    |||||||| | || |||||||| |||||||||| ||| ||||| || |||||||    
T  8939359 atcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcattt 8939412  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9364284 - 9364432
Alignment:
Q  26 agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt 125  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||||||||  || || |||||| |||| || || ||||| |||| ||||    
T  9364284 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgtcgt 9364383  T
Q  126 gctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    ||| ||||||||||||| ||  |||||| ||||||||||||||||||||    
T  9364384 gctttagtctatgactttttttcaaatggttcgttgcagaaattcattt 9364432  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9337425 - 9337573
Alignment:
Q  26 agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt 125  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||||||||  || || |||||  |||| || || ||||| |||| ||||    
T  9337425 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgtcgt 9337524  T
Q  126 gctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    ||| ||||||||||||| ||  |||||| ||||||||||||||||||||    
T  9337525 gctttagtctatgactttttttcaaatggttcgttgcagaaattcattt 9337573  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 9242767 - 9242612
Alignment:
Q  19 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 118  Q
    |||||| |||||| ||||| ||||||||||||||||||||  |||| || || || ||||| ||||  || || |||||| |||  || || ||||||||    
T  9242767 cagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggatt 9242668  T
Q  119 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    ||  |||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  9242667 tcgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcattt 9242612  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 8962183 - 8962339
Alignment:
Q  18 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat 117  Q
    ||||| |||||||| |  ||||||||||||||||| |||||| |||| |||||||| ||| | |||| |||||| || ||| ||||||| || |||||||    
T  8962183 acagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggat 8962282  T
Q  118 ttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    || |||||||| | || |||||||| ||||| |||| ||||||||| || |||||||    
T  8962283 tttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcattt 8962339  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 9466959 - 9466861
Alignment:
Q  21 gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggattt 119  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| |||| |||||| |||||| |||| || || |||||||||    
T  9466959 gagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggattt 9466861  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 9377603 - 9377749
Alignment:
Q  24 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 123  Q
    ||||||||||| || ||||| ||||||||  ||||| |||| ||||| || ||| |||||| ||| ||||||||  | || ||||| |||||||| || |    
T  9377603 ggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgttcgcttgctcggattctgtgctgatggattccacc 9377702  T
Q  124 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattc 170  Q
    ||||||| |||||||| ||||| |||||||  |||||||| ||||||    
T  9377703 gtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattc 9377749  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 9236630 - 9236488
Alignment:
Q  24 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 123  Q
    ||||||||||| || ||||| || ||||| |||||| |||| ||||| || ||| |||||| ||| ||||| ||  | |||||||| |||||||| || |    
T  9236630 ggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccacc 9236531  T
Q  124 gtgctctagtctatgacttcttcccaaatgattcgttgcagaa 166  Q
    ||||||| |||||||| ||||| || ||||  || ||||||||    
T  9236530 gtgctcttgtctatgatttctttccgaatggctccttgcagaa 9236488  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 8862029 - 8861971
Alignment:
Q  18 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccacca 76  Q
    ||||||||||| || || |||||||| ||||||||||||| | |||| |||||||||||    
T  8862029 acagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccacca 8861971  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 8979429 - 8979311
Alignment:
Q  18 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat 117  Q
    ||||| ||||| || || |||||||| |  |||||||||| | |||| |||||||||||  |||||| ||| || |||||| |||| ||||| || |||     
T  8979429 acagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaa 8979330  T
Q  118 ttcatcgtgctctagtcta 136  Q
    ||||||||| ||| |||||    
T  8979329 ttcatcgtgttcttgtcta 8979311  T

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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 9171375 - 9171532
Alignment:
Q  17 cacagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatgga 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||| |||||| ||||||| |||||||||    
T  9171375 cacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatgga 9171474  T
Q  117 tttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 174  Q
    ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||    
T  9171475 tttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcattt 9171532  T

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Target: scaffold0690 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 1486 - 1639
Alignment:
Q  19 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 118  Q
    ||||||||||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||  || || |||||| ||||||| || ||||| ||    
T  1486 cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggttt 1585  T
Q  119 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcat 172  Q
    || ||||||| |||| |||||||| || ||||||| |||||| |||||||||||    
T  1586 tcgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcat 1639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 15910620 - 15910467
Alignment:
Q  19 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 118  Q
    ||||||||||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||  || || |||||  |||||||  | ||||| ||    
T  15910620 cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggttt 15910521  T
Q  119 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcat 172  Q
    |||||||||| |||| |||||||| || ||||||| |||||| || ||||||||    
T  15910520 tcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcat 15910467  T

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