View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_7 (Length: 631)

Name: NF16931_low_7
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_7
NF16931_low_7
[»] chr8 (1 HSPs)
chr8 (19-617)||(42005423-42006023)
[»] chr1 (2 HSPs)
chr1 (455-596)||(49171816-49171955)
chr1 (538-586)||(2899913-2899961)
[»] chr5 (2 HSPs)
chr5 (457-596)||(10018942-10019080)
chr5 (518-579)||(5547835-5547896)
[»] chr4 (2 HSPs)
chr4 (456-617)||(16542893-16543053)
chr4 (519-579)||(133997-134057)
[»] chr3 (3 HSPs)
chr3 (499-617)||(33819360-33819477)
chr3 (536-587)||(16970448-16970499)
chr3 (533-587)||(16240393-16240447)
[»] chr6 (3 HSPs)
chr6 (455-617)||(29816598-29816756)
chr6 (552-587)||(1881931-1881966)
chr6 (538-587)||(33691502-33691551)
[»] chr7 (3 HSPs)
chr7 (513-617)||(49076388-49076487)
chr7 (536-583)||(32057332-32057379)
chr7 (537-581)||(26798757-26798801)
[»] scaffold0085 (1 HSPs)
scaffold0085 (536-617)||(47573-47653)


Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Original strand, 42005423 - 42006023
Alignment:
Q  19 caaggctcatcaagttggaagggttagagtgttgtctagactccaccgtatatgttgatggaaccaaagcaatgatcacaagagcaacaataataaaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005423 caaggctcatcaagttggaagggttagagtgttgtctagactccaccgtatatgttgatggaaccaaagcaatgatcacaagagcaacaataataaaaac 42005522  T
Q  119 tttgtgagagaaagccattttctttttatattttcaatgattagttt-ggcgaaaacatgcttataaggtctatatatatacactcctatagctaggggt 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42005523 tttgtgagaggaagccattttctttttatattttcaatgattagttttggcgaaaacatgcttataaggtctatatttatacactcctatagctaggggt 42005622  T
Q  218 atttgatttgtaacgattagatgaaaagatgaagggtgtaaatataattgtgcaattgtaacatataagataagactagtgaatcgtcataaaagaaaat 317  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005623 atttaatttgtaacgattggatgaaaagatgaagggtgtaaatataattgtgcaattgtaacatataagataagactagtgaatcgtcataaaagaaaat 42005722  T
Q  318 taaaaatagaagactagtgaataggaaaagatgagcttcttatgtgctgtgaggatgaagatttaactttttggtagttaaatgccaattattttcttac 417  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005723 taaaaattgaagactagtgaataggaaaagatgagcttcttatgtgctgtgaggatgaagatttaactttttggtagttaaatgccaattattttcttac 42005822  T
Q  418 gatcgatttgtatcctttaaaattattttcnnnnnnngataacaagagggccttag-ccccagaaaaaagagagaactaccacttaataaaaggcggagt 516  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||    
T  42005823 gatcgatttgtatcctttaaaattattttctttttttgataacaagagggccttagcccccaaaaaaaaaagagaactaccatttaataaaaggcggagt 42005922  T
Q  517 caaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgc 616  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42005923 caaaataccaatagagtcagctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataatctcttatcacatgtcatattcgc 42006022  T
Q  617 c 617  Q
    |    
T  42006023 c 42006023  T

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Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 455 - 596
Target Start/End: Complemental strand, 49171955 - 49171816
Alignment:
Q  455 gataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaa 554  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||   ||||  |||||||||||    
T  49171955 gataacaagagggccttagcccg-gaaaaaagagagaactaccacttaacaaaatgcggaatcgaaataccaatagagtcaattaaag-taacaaattaa 49171858  T
Q  555 tttgagcaggacaatgctcatataacatcaaagaataacctc 596  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  49171857 tttgagcacgacaatgctcatataacatcaaagaataacctc 49171816  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 586
Target Start/End: Original strand, 2899913 - 2899961
Alignment:
Q  538 taaaaataacaaattaatttgagcaggacaatgctcatataacatcaaa 586  Q
    ||||||||||| | |||||||||||| ||||||||||||||| ||||||    
T  2899913 taaaaataacatactaatttgagcagtacaatgctcatataatatcaaa 2899961  T

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Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 457 - 596
Target Start/End: Complemental strand, 10019080 - 10018942
Alignment:
Q  457 taacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaatt 556  Q
    |||||||||||||||||||| | ||||||||||| | | || ||||| |||| |||||||| |||||| ||||||||| |||||||||||||||||||||    
T  10019080 taacaagagggccttagcccaa-aaaaaagagaggattgccgcttaacaaaacgcggagtcgaaatactaatagagtcagctaaaaataacaaattaatt 10018982  T
Q  557 tgagcaggacaatgctcatataacatcaaagaataacctc 596  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  10018981 tgagtaggacaatgttcatataacatcaaagaataacctc 10018942  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 518 - 579
Target Start/End: Complemental strand, 5547896 - 5547835
Alignment:
Q  518 aaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataa 579  Q
    |||||||||||||| || ||||| | ||||||| ||||||||||||||||||||||||||||    
T  5547896 aaaataccaatagaatcagctaacattaacaaactaatttgagcaggacaatgctcatataa 5547835  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 456 - 617
Target Start/End: Complemental strand, 16543053 - 16542893
Alignment:
Q  456 ataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaat 555  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| | ||| ||||    ||||| |||||||||  ||||  || |||||||| ||||||||    
T  16543053 ataacaagagggccttagccccaaaaaaaagatagaacaaccgcataacaaaacatagagtcgaaataccaacggagttagccaaaaataataaattaat 16542954  T
Q  556 ttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 617  Q
    ||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  16542953 ttgagcaagataatgctcatataacatcaaagaataacctc-catcacatgtcatattcgcc 16542893  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 579
Target Start/End: Complemental strand, 134057 - 133997
Alignment:
Q  519 aaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataa 579  Q
    ||||||||||||| || ||||| | ||||||| |||||||||||||| ||||||| |||||    
T  134057 aaataccaatagaatcagctaacattaacaaactaatttgagcaggataatgctcgtataa 133997  T

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Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 499 - 617
Target Start/End: Original strand, 33819360 - 33819477
Alignment:
Q  499 cttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctctt 598  Q
    ||||| |||| |||||||  |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  33819360 cttaacaaaatgcggagttgaaatactaatagagtcagctaaaaataacaaattaattttagcaggacaatgctcatataacatcaaagaataacctc-c 33819458  T
Q  599 atcacatgtcatattcgcc 617  Q
    |||||||| | ||||||||    
T  33819459 atcacatgccttattcgcc 33819477  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 16970448 - 16970499
Alignment:
Q  536 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 587  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  16970448 gctaaaaacaacatactaatttgagcaggacaatgctcatataacatcaaag 16970499  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 587
Target Start/End: Original strand, 16240393 - 16240447
Alignment:
Q  533 tcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 587  Q
    |||| |||||| || |||||||| ||||| |||||||||| ||||||||||||||    
T  16240393 tcggttaaaaacaataaattaatctgagctggacaatgcttatataacatcaaag 16240447  T

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Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 455 - 617
Target Start/End: Original strand, 29816598 - 29816756
Alignment:
Q  455 gataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaa 554  Q
    ||||| ||||| |||||||||| |||||| ||||||||||||| ||||| |||  ||| |||| ||||||| ||| |||| ||||||||||| ||| |||    
T  29816598 gataaaaagagagccttagccc-agaaaa-agagagaactaccgcttaacaaattgcgcagtcgaaataccgataaagtcagctaaaaataataaa-taa 29816694  T
Q  555 tttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 617  Q
     ||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  29816695 attgagcaagacaatgctcatataacatcaaataataacct-tcatcacatgtcatattcgcc 29816756  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 587
Target Start/End: Original strand, 1881931 - 1881966
Alignment:
Q  552 taatttgagcaggacaatgctcatataacatcaaag 587  Q
    ||||||||||||||||||||||||||||||||||||    
T  1881931 taatttgagcaggacaatgctcatataacatcaaag 1881966  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 587
Target Start/End: Original strand, 33691502 - 33691551
Alignment:
Q  538 taaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 587  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  33691502 taaaaataacatattaatttgagcaggaccattttcatataacatcaaag 33691551  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 513 - 617
Target Start/End: Original strand, 49076388 - 49076487
Alignment:
Q  513 gagtcaaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatat 612  Q
    ||||||||||| ||||| |||| ||||||||||| |||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49076388 gagtcaaaatatcaataaagtcagctaaaaataataaattaatttg----cgacaatgctcatataacatcaaagaataacct-ttatcacatgtcatat 49076482  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 583
Target Start/End: Original strand, 32057332 - 32057379
Alignment:
Q  536 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatc 583  Q
    ||||||||||||| ||||||||||||||||||||  || |||||||||    
T  32057332 gctaaaaataacatattaatttgagcaggacaatagtcgtataacatc 32057379  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 581
Target Start/End: Original strand, 26798757 - 26798801
Alignment:
Q  537 ctaaaaataacaaattaatttgagcaggacaatgctcatataaca 581  Q
    |||||||||||||| |||| |||| ||||||||||| ||||||||    
T  26798757 ctaaaaataacaaactaatatgagtaggacaatgcttatataaca 26798801  T

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Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 47653 - 47573
Alignment:
Q  536 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 617  Q
    |||| |||||| ||||||| ||||  || ||||||||||||||| ||||||||| ||||||  |||||||||||||||||||    
T  47653 gctagaaataaaaaattaacttgaagagtacaatgctcatataatatcaaagaaaaacctc-catcacatgtcatattcgcc 47573  T

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