View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_8 (Length: 623)
Name: NF16931_low_8
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 17 - 605
Target Start/End: Complemental strand, 33383741 - 33383152
Alignment:
| Q |
17 |
taccctacacaattaagaatttcaatgttgtgagttaatgataagggctaggtgagaatttatccaagttcctgaaaaataaagagagagtaacaataat |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383741 |
taccctacacaattaagaatttcaatgttgtaagttaatgataagggctaggtgagaatttatccaagttcctgaaaaataaagagagagtaacaataat |
33383642 |
T |
|
| Q |
117 |
ggtggaccaacattaatgcttccatcactacttgaggcaaatgatgatggtttggacagttgtgatatacttgaattaactatttgtttttagctaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33383641 |
ggtggaccaacattaatgcttccatcactacttgaggcaaatgatgatggtttgcacagttgtgatatacttgaattaactatttgtttttagctcaaat |
33383542 |
T |
|
| Q |
217 |
cactgaaattattgagataacaaagcaacttcataacagaagatacacacaacatatatatgcatagaaataacattgttgtgtggtatttcaatgccta |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383541 |
cactgaaattattgagataacaaatcaacttcataacagaagatacacacaatatatatatgcatagaaataacattgttgtgtggtatttcaatgccta |
33383442 |
T |
|
| Q |
317 |
agcaaacccaactcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacagacctcttagctaactttgacaacaatttcactcttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383441 |
agcaaacccaactcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacagacctcttagctaactttgacaacaatttcactcttt |
33383342 |
T |
|
| Q |
417 |
tcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacac-tatctccctccaatccaacccattttt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33383341 |
tcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacacttatctccctccaatccaacccattttt |
33383242 |
T |
|
| Q |
516 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgatag |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383241 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgatag |
33383152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 416 - 599
Target Start/End: Original strand, 33390713 - 33390896
Alignment:
| Q |
416 |
ttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttt |
515 |
Q |
| |
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||||||||||||| | ||||||| ||||||||| | |||||||||| || |||| ||||||||| ||||| |||| | | || |||| ||||| ||| |
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| T |
33390713 |
ttcctcatttcctttgcttcttctccttccataaccttcttcacagccttctccactgcatcccaatgaactttatcactcacctttccatcccatgttt |
33390812 |
T |
|
| Q |
516 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaa |
599 |
Q |
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| T |
33390813 |
tagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaa |
33390896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 416 - 599
Target Start/End: Original strand, 27688480 - 27688663
Alignment:
| Q |
416 |
ttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttt |
515 |
Q |
| |
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||||||||||| | | ||||||| ||||||||| |||||||||||| || |||| ||||||||||| |||| |||| || || |||||| |||| |
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| T |
27688480 |
ttcctcatttcatatgcttcttccccttccataaccctcttcacagccttctccactgcatcccattcaacattatccccaaccttcataacccactttt |
27688579 |
T |
|
| Q |
516 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaa |
599 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || || || ||||||||||||| |
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| T |
27688580 |
taactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaa |
27688663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 511 - 599
Target Start/End: Complemental strand, 18989693 - 18989605
Alignment:
| Q |
511 |
ttttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaa |
599 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||| | ||||||||||| |
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| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaa |
18989605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 27688392 - 27688444
Alignment:
| Q |
328 |
ctcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacag |
380 |
Q |
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|||||| ||||| ||| |||| | ||||||||||||||| ||||||||||||| |
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| T |
27688392 |
ctcctcaattaaggcattcaactgtgagtaagatgatccatcttcttccacag |
27688444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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