View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_9 (Length: 617)
Name: NF16931_low_9
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_9 |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Original strand, 1571705 - 1572294
Alignment:
| Q |
19 |
gttaacacctacttgtgctttaaaatttcaggcacccgatatggtgctagtttgaggaagcaaattaagaaaatggaagtcagtcagcacagtaaattct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1571705 |
gttaacacctacttgtgctttaaaatttcaggcacccgatatggtgctagtttgaggaagcaaattaagaaaatggaagtcagtcagcacagtaaattct |
1571804 |
T |
|
| Q |
119 |
tctgcgagttctgtggaaaggtagtctttatatctctgcaatgatgaattcaatcagctttgtttgacaatgcacataattttccgttatgctatgttgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
1571805 |
tctgcgagttctgtggaaaggtagtctttatatctctgcaatgatgaattcaatcagctctgtttgacaatgcacgtaattttccgttatgctatgttgt |
1571904 |
T |
|
| Q |
219 |
taatacagtatgctgtcaagaggaaagctgtcggtatttggggctgcaaagattgtggaaaagtgaaagctggtggtgcttacactttgaagtaagaatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1571905 |
taatacagtatgctgtcaagaggaaagctgtcggtatttggggctgcaaagattgtggaaaagtgaaagctggtggtgcttacactttgaagtaagaatc |
1572004 |
T |
|
| Q |
319 |
ttcatcaaatctgttttcccgcttggtttattttcttgtttatagttgttaatgtcgtgcttctgttcttgtgtatttttgttgacagtactgccagtgc |
418 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1572005 |
ttcatcaaatctgttttcccacttggtttattttcttgtttatagttgttaatgtcgtgcttctgttcttgtgtatttttgttgacagtactgccagtgc |
1572104 |
T |
|
| Q |
419 |
tgtaactgtgagaagcacaatccgaaggttgagggagcagactgagagttagaatccattcacgnnnnnnncgttttgttctggaagtcattggagagac |
518 |
Q |
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| T |
1572105 |
tgtaactgtgagaagcacaatccgaaggttgagggagcagactgagagttagaatccatttacgtttttgtcgttttgttctggaagtcattggagagac |
1572204 |
T |
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| Q |
519 |
ttttgtagctgttttaagattatattttgtttggatagttgatgaacaagaagttttgctggtttttgtcaaatgtatctctgatgatgt |
608 |
Q |
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| T |
1572205 |
ttttgtagctgttttaagattatattttgtttggatagttgatgaacaagaagttttgctggtttttgtcaaatgtatctctgatgatgt |
1572294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 215 - 476
Target Start/End: Original strand, 15355 - 15614
Alignment:
| Q |
215 |
ttgttaatacagtatgctgtcaagaggaaagctgtcggtatttggggctgcaaagattgtggaaaagtgaaagctggtggtgcttacactttgaagtaag |
314 |
Q |
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|||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
15355 |
ttgttaatacagtatgctgttaagaggaaggctgttggtatttggggttgcaaagattgtggaaaggtgaaggctggtggtgcttacactttgaagtaag |
15454 |
T |
|
| Q |
315 |
aatcttcatcaaatctgttttcccgcttggtttattttcttgtttatag--ttgttaatgtcgtgcttctgttcttgtgtatttttgttgacagtactgc |
412 |
Q |
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| T |
15455 |
aatcttcctcaaatcttttttccc-atttattcatcttcttgtctgtagttttgttaacattgtgctt---ttgttgtgtatttttcgtgacagtactgc |
15550 |
T |
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| Q |
413 |
cagtgctgtaactgtgagaagcacaatccgaaggttgagggagcagactgagagttagaatcca |
476 |
Q |
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| T |
15551 |
cagtgctgtaaccgtgcgaagcaccatccgtaggctaagggaacagactgagagttagaatcca |
15614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 15158 - 15283
Alignment:
| Q |
19 |
gttaacacctacttgtgctttaaaatttcaggcacccgatatggtgctagtttgaggaagcaaattaagaaaatggaagtcagtcagcacagtaaattct |
118 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15158 |
gttaacatttacttgtgctttaaattttcaggcacccgatatggtgctagtttaaggaagcaaattaagaaaatggaagttagtcagcacagtaaattct |
15257 |
T |
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| Q |
119 |
tctgcgagttctgtggaaaggtagtc |
144 |
Q |
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|||||||||||||||||||||||||| |
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| T |
15258 |
tctgcgagttctgtggaaaggtagtc |
15283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 42697076 - 42696987
Alignment:
| Q |
52 |
acccgatatggtgctagtttgaggaagcaaattaagaaaatggaagtcagtcagcacagtaaattcttctgcgagttctgtggaaaggta |
141 |
Q |
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| T |
42697076 |
acccgttatggtgctagtttgcgtaagcagattaaaaagatggaagtcagtcagcacagtaaatttttctgtgaattttgtggaaaggta |
42696987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 41071731 - 41071821
Alignment:
| Q |
52 |
acccgatatggtgctagtttgaggaagcaaattaagaaaatggaagtcagtcagcacagtaaattcttctgcgagttctgtggaaaggtag |
142 |
Q |
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| T |
41071731 |
acccgttatggtgctagtttgcgtaagcagattaaaaagatggaagtcagtcagcacagcaaatttttctgtgaattttgtggaaaggtag |
41071821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 42696903 - 42696814
Alignment:
| Q |
224 |
cagtatgctgtcaagaggaaagctgtcggtatttggggctgcaaagattgtggaaaagtgaaagctggtggtgcttacactttgaagtaa |
313 |
Q |
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| T |
42696903 |
cagtatgctgtgaagagaaaggctgtaggaatatggggatgcaaggattgcggtaaagtgaaagcaggcggagcttacactttgaagtaa |
42696814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 41071929 - 41072018
Alignment:
| Q |
224 |
cagtatgctgtcaagaggaaagctgtcggtatttggggctgcaaagattgtggaaaagtgaaagctggtggtgcttacactttgaagtaa |
313 |
Q |
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||||||||||| ||||| || ||||| || || ||||| ||||| ||||| || ||||| ||||| || || || ||||||||||||||| |
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| T |
41071929 |
cagtatgctgtgaagagaaaggctgtagggatatggggatgcaaggattgcggtaaagtaaaagcaggcggagcctacactttgaagtaa |
41072018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 35647245 - 35647309
Alignment:
| Q |
52 |
acccgatatggtgctagtttgaggaagcaaattaagaaaatggaagtcagtcagcacagtaaatt |
116 |
Q |
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||||| ||| ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
35647245 |
acccgttatagtgctagtttgcataagcagattaagaagatggaagtcagtcagcacagcaaatt |
35647309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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