View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16932_high_3 (Length: 254)
Name: NF16932_high_3
Description: NF16932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16932_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 36947882 - 36947984
Alignment:
| Q |
133 |
gtttggatagatatagggacagagcagaaaaagtccccaacaacattgtaccacaatatttatcggcagaagaccccaaccccacattcaaagacatggt |
232 |
Q |
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| T |
36947882 |
gtttggatagatatagggacagagcagaaaaagtccccaacaacattgtaccacaatatttatcggcagaagtccccaaccccacatttaaagacatggt |
36947981 |
T |
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| Q |
233 |
aga |
235 |
Q |
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||| |
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| T |
36947982 |
aga |
36947984 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36947750 - 36947797
Alignment:
| Q |
1 |
cactagtctatattgaacaagaacatgaagaatcccaaaggagcaatg |
48 |
Q |
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| T |
36947750 |
cactagtctatattgaacaagagcatgaagaatcccaaaggagcaatg |
36947797 |
T |
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