View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16932_high_5 (Length: 239)
Name: NF16932_high_5
Description: NF16932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16932_high_5 |
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| [»] scaffold0135 (7 HSPs) |
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Alignment Details
Target: scaffold0135 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1951 - 1816
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1951 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
1852 |
T |
|
| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1851 |
gttatgcatgtaaaaattggaaagaaactcttttag |
1816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6166 - 6031
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6166 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
6067 |
T |
|
| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6066 |
gttatgcatgtaaaaattggaaagaaactcttttag |
6031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10381 - 10246
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10381 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
10282 |
T |
|
| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
10281 |
gttatgcatgtaaaaattggaaagaaactcttttag |
10246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 14596 - 14461
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14596 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
14497 |
T |
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| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
14496 |
gttatgcatgtaaaaattggaaagaaactcttttag |
14461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18811 - 18676
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18811 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
18712 |
T |
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| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18711 |
gttatgcatgtaaaaattggaaagaaactcttttag |
18676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 23026 - 22891
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23026 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
22927 |
T |
|
| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
22926 |
gttatgcatgtaaaaattggaaagaaactcttttag |
22891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 27241 - 27106
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27241 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
27142 |
T |
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| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
27141 |
gttatgcatgtaaaaattggaaagaaactcttttag |
27106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 9203868 - 9203733
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9203868 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
9203769 |
T |
|
| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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| T |
9203768 |
gttatgcatgtaaaaattggaaagaaactcttttag |
9203733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 9208087 - 9207952
Alignment:
| Q |
1 |
caatatcaagacaaagcattccataatccatactatcagtttagtttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9208087 |
caatatcaagacaaagcattccataatccatactatcagttaagtttgcattgtatgctacctaaggctatcccgtgttctaaatgagttaacacacacg |
9207988 |
T |
|
| Q |
101 |
gttatgcatgtaaaaattggaaagaaactcttttag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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| T |
9207987 |
gttatgcatgtaaaaattggaaagaaactcgtttag |
9207952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 37617514 - 37617567
Alignment:
| Q |
78 |
ttctaaatgagttaacacacacggttatgcatgtaaaaattggaaagaaactcttt |
133 |
Q |
| |
|
|||||||||| | |||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
37617514 |
ttctaaatgattcaacacaca--gttatacatgtaaaaatttgaaagaaactcttt |
37617567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 22082494 - 22082409
Alignment:
| Q |
46 |
ttgcattgtatgctacctaaggctatcatgtgttctaaatgagttaacacacacggttatgcatgtaaaaattggaaagaaactcttt |
133 |
Q |
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||||| ||||||||| ||||||||| | | |||||||||| | |||||||| ||||| |||||||| ||| |||||||||||||| |
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| T |
22082494 |
ttgcaatgtatgctatctaaggctaccccatattctaaatgattcaacacaca--gttatacatgtaaatatttgaaagaaactcttt |
22082409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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