View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_17 (Length: 364)
Name: NF16933_high_17
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_17 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 27574549 - 27574778
Alignment:
| Q |
19 |
gttagtccacgttgctttgcttcaaattggtgcatttatattttaagttgtgtaaatttttatatgt--agggtgtggcactcacgaaagttcccaaagt |
116 |
Q |
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| T |
27574549 |
gttagtccacgttgctttgcttcaaattggtgcatttatattttaagttgtgtaaatttttatatgtgtagggtgtggcactcacgaaagttcccaaagt |
27574648 |
T |
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| Q |
117 |
gaaattccttataataataggaggggcaaagttcagggcaccttcagtggtagagaaagcatattcttctcaaattggttgcccttctcttcattttcta |
216 |
Q |
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| T |
27574649 |
gaaattccttataataataggaggggcaaagttcagggcaccttcagtggtagagaaagcatattcttctcaaattggttgcccttctcttcattttcta |
27574748 |
T |
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| Q |
217 |
ggtacatcatctgcctctctactttcaatttg |
248 |
Q |
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| T |
27574749 |
ggtacatcatctgcctctc--ctttcaatttg |
27574778 |
T |
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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 172079 - 172135
Alignment:
| Q |
245 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
301 |
Q |
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| T |
172079 |
tttgatagtaagaaatcccgttctccctttagatcggtcctgtatttagaatctgat |
172135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 6926852 - 6926796
Alignment:
| Q |
245 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
301 |
Q |
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| T |
6926852 |
tttgatagtaagaaatcccgttctccctttagatcggtcctgtatttagaatctgat |
6926796 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 502109 - 502053
Alignment:
| Q |
245 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
301 |
Q |
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| T |
502109 |
tttgatagtaagaaatcccgttctccctttagatcggtcctgtatttagaatctgat |
502053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 13674465 - 13674521
Alignment:
| Q |
245 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
301 |
Q |
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| T |
13674465 |
tttgatagtaagaaatcatgttctccctttagatcggtcctgtatttagaatctgat |
13674521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 20482749 - 20482805
Alignment:
| Q |
245 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
301 |
Q |
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| T |
20482749 |
tttgatagtaagaaatcctgttctccctttagatcggtcctgtatttagaatctgat |
20482805 |
T |
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