View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_high_18 (Length: 363)

Name: NF16933_high_18
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_high_18
NF16933_high_18
[»] chr5 (1 HSPs)
chr5 (20-350)||(14962400-14962732)
[»] scaffold0477 (2 HSPs)
scaffold0477 (255-350)||(8766-8861)
scaffold0477 (157-243)||(8848-8935)
[»] chr4 (2 HSPs)
chr4 (157-243)||(18179850-18179937)
chr4 (255-343)||(18179775-18179863)
[»] chr1 (2 HSPs)
chr1 (169-243)||(2156747-2156821)
chr1 (169-216)||(593037-593083)
[»] chr6 (2 HSPs)
chr6 (255-343)||(4639256-4639344)
chr6 (176-243)||(4639202-4639269)
[»] chr3 (2 HSPs)
chr3 (172-243)||(46144306-46144377)
chr3 (255-329)||(46144245-46144319)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 14962400 - 14962732
Alignment:
Q  20 attggagctcttgaaatgttcatgtcatgggccaaagtaaagaaagctgtctttggacctacaacttcaggttgataggcaaaagcatctagtttgtctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  14962400 attggagctcttgaaatgttcatgtcatgggccaaagtaaagaaagctgtctttggacctacaacttcaggttgataggcaaaagtatcttgtttgtctt 14962499  T
Q  120 ttttgattgattgttgtagtgaccgacttatttctgaaaatttagctg-cttgaggacaaagaaatttttgaagtgactatttatcgagtaataacattc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14962500 ttttgattgattgttgtagtgaccgacttatttctgaaaatttagctgccttgaggacaaggaaatttttgaagtgactatttatcgagtaataacattc 14962599  T
Q  219 ttgatcttaataaaagattctttac-nnnnnnnaaggaaaagattctttactaaaaggttggctagagatttcgtataaaaatactagttccgctaaatt 317  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| ||    
T  14962600 ttgatcttaataaaagattctttacttttttttaaggaaaagattctttactaaaaggttggccagagatttcgaataaaaatactatttccgctaagtt 14962699  T
Q  318 gatgatgagaatgttgtaatcttttttggattt 350  Q
    |||||||||||||||||||||||||||||||||    
T  14962700 gatgatgagaatgttgtaatcttttttggattt 14962732  T

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Target: scaffold0477 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 350
Target Start/End: Complemental strand, 8861 - 8766
Alignment:
Q  255 aaaagattctttactaaaaggttggctagagatttcgtataaaaatactagttccgctaaattgatgatgagaatgttgtaatcttttttggattt 350  Q
    ||||||| ||||||   ||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||| ||| ||||||||||||||||    
T  8861 aaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattgcaatcttttttggattt 8766  T

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Target: scaffold0477; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 8935 - 8848
Alignment:
Q  157 aaatttagctgc-ttgaggacaaagaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac 243  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||    
T  8935 aaatttagcagcgttgaggacaaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttac 8848  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 18179937 - 18179850
Alignment:
Q  157 aaatttagctgc-ttgaggacaaagaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac 243  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||    
T  18179937 aaatttagcagcgttgaggacaaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttac 18179850  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 18179863 - 18179775
Alignment:
Q  255 aaaagattctttactaaaaggttggctagagatttcgtataaaaatactagttccgctaaattgatgatgagaatgttgtaatcttttt 343  Q
    ||||||| ||||||   ||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||| ||| |||||||||    
T  18179863 aaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattgcaatcttttt 18179775  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 2156747 - 2156821
Alignment:
Q  169 ttgaggacaaagaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac 243  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||    
T  2156747 ttgaggacaaagaaattgttcaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttac 2156821  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 593083 - 593037
Alignment:
Q  169 ttgaggacaaagaaatttttgaagtgactatttatcgagtaataacat 216  Q
    |||||||||||||||| || |||||||||||||||| |||||||||||    
T  593083 ttgaggacaaagaaatgtt-gaagtgactatttatctagtaataacat 593037  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 4639256 - 4639344
Alignment:
Q  255 aaaagattctttactaaaaggttggctagagatttcgtataaaaatactagttccgctaaattgatgatgagaatgttgtaatcttttt 343  Q
    ||||||| ||||||   ||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||| ||| |||||||||    
T  4639256 aaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattgcaatcttttt 4639344  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 4639202 - 4639269
Alignment:
Q  176 caaagaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac 243  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||    
T  4639202 caaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttac 4639269  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 46144377 - 46144306
Alignment:
Q  172 aggacaaagaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac 243  Q
    |||||||||||||| |||||||||||||||||  ||||||||||| |||||| |||||||||||| ||||||    
T  46144377 aggacaaagaaattgttgaagtgactatttatgcagtaataacatacttgatgttaataaaagatcctttac 46144306  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 46144319 - 46144245
Alignment:
Q  255 aaaagattctttactaaaaggttggctagagatttcgtataaaaatactagttccgctaaattgatgatgagaat 329  Q
    ||||||| ||||||   ||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||    
T  46144319 aaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaat 46144245  T

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