View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_22 (Length: 345)
Name: NF16933_high_22
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 15871744 - 15871987
Alignment:
| Q |
18 |
gattcataccttacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatccttattctgagtttttatgcctgc |
117 |
Q |
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| T |
15871744 |
gattcatacctcacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatgtttattctgagtttttatgcctgt |
15871843 |
T |
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| Q |
118 |
ctagatgaacctccaggaccaaactcgcaaaaacnnnnnnnnncttagaaaaagagcgtaagaaagtaatctttaattaagtgcctcttttgagctttga |
217 |
Q |
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| T |
15871844 |
c-cgatgagcctccaggaccaaactcgcaaaaac--tttttttcttaaaaaaagagcataagaaagtaatctttaatcaagtacctcttttgagctttga |
15871940 |
T |
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| Q |
218 |
cgtttgtcttaactagcctctgggtctcaacttgcatacaattatac |
264 |
Q |
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| T |
15871941 |
tgtttgtcttagctagcctctgagtctcaacttgcatacaattatac |
15871987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 15871999 - 15872028
Alignment:
| Q |
281 |
ctacaaataagagtacaagaaagaaatata |
310 |
Q |
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| T |
15871999 |
ctacaaataagagtacaagaaagaaatata |
15872028 |
T |
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