View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_25 (Length: 340)
Name: NF16933_high_25
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 216 - 340
Target Start/End: Complemental strand, 45645426 - 45645302
Alignment:
| Q |
216 |
catctttaattctaatatgggtgtccagaatatctacataatccacatgatgacagagggattattacctagccaaggagcatactcaaataaagagtgg |
315 |
Q |
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| T |
45645426 |
catctttaattctaatatgggtgtccagaatatctacataatccacatgatgacaaagggattattacctagccaaggagcatactcaaataaagggtgg |
45645327 |
T |
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| Q |
316 |
atgtcaccaatttgaaataacaaat |
340 |
Q |
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| T |
45645326 |
atgtcaccaatttgaaataacaaat |
45645302 |
T |
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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 294
Target Start/End: Complemental strand, 51918129 - 51917869
Alignment:
| Q |
29 |
ttttatccaacaaccatttaattataaccttatgttgcagtgtagttaccatcaatattttcttttca-----aataaaac-aatcagcaacaaagtcat |
122 |
Q |
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| T |
51918129 |
ttttatccaacaaccattta----taaccatttgttgcagcgtagttaccatcaatattttctttccattccaaataaaaataatgagcaaca------- |
51918041 |
T |
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| Q |
123 |
ttaaaaccatatcaaagcttttaataatatcacttagatgaggctcaaaagaaatgtataattgatttagctgtcaaccatcaacagaatagacatcttt |
222 |
Q |
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| T |
51918040 |
ttaaaaccatatcaaagcttttgatagtatcgctttgatgaggctaaaaagaagtgtataattgatttagctgccaaccataagtagaatagacatcttt |
51917941 |
T |
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| Q |
223 |
aattctaatatgggtgtccagaatatctacataatccacatgatgacagagggattattacctagccaagga |
294 |
Q |
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| T |
51917940 |
gattctattatgggtgtcttgtatagctacataatcaacgtgatgaaatgggaattattaccaagcctagga |
51917869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 1515865 - 1515941
Alignment:
| Q |
71 |
tagttaccatcaatattttcttttcaaataaaacaatcagcaacaaagtcatttaaaaccatatcaaagcttttaata |
148 |
Q |
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| T |
1515865 |
tagttaccaccaatgtttgctttccaagtaaaacaatc-gaaacaaaatcatttaaaaccagatcaaaacttttaata |
1515941 |
T |
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