View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_27 (Length: 310)
Name: NF16933_high_27
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 7623391 - 7623530
Alignment:
| Q |
10 |
attatactcaagtcaatataaccaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
109 |
Q |
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| T |
7623391 |
attatactcaagtcaatataagcaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
7623490 |
T |
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| Q |
110 |
gaatactatatttttaatttaattttctgggaagattttt |
149 |
Q |
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| T |
7623491 |
gaatactatatttttaatttaattttctcggaagattttt |
7623530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 7623691 - 7623833
Alignment:
| Q |
147 |
tttattctcttatataaaattcgaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
246 |
Q |
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| T |
7623691 |
tttattctcttagataaaattcaaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
7623790 |
T |
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| Q |
247 |
ttgagaaaatgatattaattaactaactaacctgacgcaagtgtttg |
293 |
Q |
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| T |
7623791 |
ttgagaaaatgatattaat----taactaacctgacgcaagtgtttg |
7623833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 7659908 - 7659852
Alignment:
| Q |
237 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttg |
293 |
Q |
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| T |
7659908 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttg |
7659852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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