View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_29 (Length: 290)
Name: NF16933_high_29
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 7962160 - 7962415
Alignment:
| Q |
18 |
atttctgtccacaatgaagaataatacaaaacatcgccccccaaactgtcgattcggataataacagccttgaattttgttgagtcaccgacttcacgga |
117 |
Q |
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| T |
7962160 |
atttctgtccacaatgaagaataatacaaaacatcgccccccaaactgtcgattcggatattaacagccttgaattttgttgagtcaccgacttcacgga |
7962259 |
T |
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| Q |
118 |
tcttgtcaatgaactcttgtccaatgattttcctattaatggtctctgagagtcggatgagggcgattacttgtttactcct-----ttccaacagtcca |
212 |
Q |
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| T |
7962260 |
tcttgtcaatgaactcttgtccaatgattttcctattaatggtctttgagagtcggatgagggcgattacttctttactccttgatattccaacagtcca |
7962359 |
T |
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| Q |
213 |
ttttctaactagagagtattctctggaataaactaaattcaatgatttcaccccaa |
268 |
Q |
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| T |
7962360 |
ttttctaactagagagtattctctggaataaaccaaattcaatgatttcaccccaa |
7962415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 7972542 - 7972686
Alignment:
| Q |
18 |
atttctgtccacaatgaagaataatacaaaacatcgccccccaaactgtcgattcggataataacagccttgaattttgttgagtcaccgacttcacgga |
117 |
Q |
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| T |
7972542 |
atttttgtccacattaaagaataaaacaaaatatcgccccccaaactatcaattcggataataacagccttgaatttttttgactcaccggcttcacgga |
7972641 |
T |
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| Q |
118 |
tcttgtcaatgaactcttgtccaatgattttcctattaatggtct |
162 |
Q |
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| T |
7972642 |
tcttgttaatgaaatcttgtccaatgattctcctattgatggtct |
7972686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 268
Target Start/End: Complemental strand, 47293125 - 47292907
Alignment:
| Q |
55 |
cccccaaactgtcgattcggataataacagccttgaattttgttgagtcaccgacttcacggatcttgtcaatgaactcttgtccaatgattttcctatt |
154 |
Q |
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| T |
47293125 |
cccccgaactgtcaattcggataataacagccttgcaattttttgactcactgacttcacggattttgttaatgaactcttgtgcaatgattttcctatc |
47293026 |
T |
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| Q |
155 |
aatggtctctgagagtcggatgagggcgattacttgtttactcct-----ttccaacagtccattttctaactagagagtattctctggaataaactaaa |
249 |
Q |
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| T |
47293025 |
gatggtccctgagactcggatgacggcgattacttcttcacctcttgatattccaacagtccattttctaactcgagagtattttctgaaatcaaccata |
47292926 |
T |
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| Q |
250 |
ttcaatgatttcaccccaa |
268 |
Q |
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| T |
47292925 |
cacaatgatttcaccccaa |
47292907 |
T |
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