View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16933_high_31 (Length: 252)
Name: NF16933_high_31
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 52028110 - 52027964
Alignment:
| Q |
26 |
tatttaatattttgattgcaataaataatttgatttctatttacaaacaaaatccctaactagaaattatttgaccgtaggtacaaccataaatgtgcct |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52028110 |
tatttaatattttgattgcaataaataatttgatttctatttacaaacaaaatccctaactagaaattatttgaccgtaggtacaaccataaatgtgcct |
52028011 |
T |
|
| Q |
126 |
ctaactttcactattgacccagacgaggcgtcaattatgtatgtcgt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52028010 |
ctaactttcactattgacccagacgaggcgtcaattatgtatgtcgt |
52027964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University