View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_high_33 (Length: 250)

Name: NF16933_high_33
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_high_33
NF16933_high_33
[»] chr8 (20 HSPs)
chr8 (71-166)||(35861574-35861668)
chr8 (69-166)||(28904077-28904174)
chr8 (69-165)||(13833713-13833809)
chr8 (113-166)||(14077013-14077066)
chr8 (69-166)||(24090988-24091084)
chr8 (69-166)||(24851054-24851151)
chr8 (114-166)||(24518741-24518793)
chr8 (95-166)||(15176567-15176638)
chr8 (101-166)||(17649692-17649757)
chr8 (95-166)||(24109169-24109241)
chr8 (115-166)||(24381481-24381533)
chr8 (112-166)||(17976128-17976182)
chr8 (69-166)||(18570419-18570516)
chr8 (94-166)||(7985007-7985080)
chr8 (114-166)||(14271731-14271784)
chr8 (118-166)||(19784938-19784987)
chr8 (114-166)||(30117812-30117865)
chr8 (95-166)||(30832829-30832901)
chr8 (198-250)||(44462714-44462766)
chr8 (198-250)||(44470245-44470297)
[»] chr6 (19 HSPs)
chr6 (70-166)||(32759859-32759955)
chr6 (77-162)||(16175673-16175758)
chr6 (197-246)||(3018211-3018260)
chr6 (69-166)||(10822127-10822223)
chr6 (114-166)||(27961104-27961156)
chr6 (83-162)||(16167712-16167791)
chr6 (94-166)||(17383648-17383720)
chr6 (95-166)||(21079856-21079927)
chr6 (116-166)||(20404167-20404217)
chr6 (69-166)||(22564659-22564756)
chr6 (69-166)||(14723575-14723671)
chr6 (95-166)||(9339113-9339184)
chr6 (116-161)||(9507426-9507472)
chr6 (116-162)||(21060560-21060606)
chr6 (72-166)||(30356153-30356247)
chr6 (114-166)||(9898021-9898074)
chr6 (114-166)||(13216459-13216512)
chr6 (114-166)||(3358033-3358085)
chr6 (95-166)||(21760542-21760614)
[»] scaffold0086 (2 HSPs)
scaffold0086 (69-166)||(12903-13000)
scaffold0086 (95-166)||(11983-12054)
[»] chr7 (18 HSPs)
chr7 (69-166)||(2506920-2507017)
chr7 (113-166)||(9722341-9722394)
chr7 (198-250)||(46419943-46419995)
chr7 (114-166)||(1254850-1254902)
chr7 (93-166)||(8038909-8038983)
chr7 (114-166)||(5046988-5047040)
chr7 (83-166)||(4900454-4900537)
chr7 (93-166)||(2505733-2505807)
chr7 (69-166)||(8317551-8317648)
chr7 (93-166)||(24751333-24751404)
chr7 (114-166)||(9079036-9079089)
chr7 (93-158)||(20175992-20176057)
chr7 (114-166)||(21502744-21502797)
chr7 (94-160)||(3736235-3736300)
chr7 (198-250)||(7306117-7306169)
chr7 (95-166)||(13252792-13252864)
chr7 (72-164)||(15611152-15611243)
chr7 (95-166)||(26249210-26249282)
[»] chr4 (24 HSPs)
chr4 (113-166)||(13588608-13588661)
chr4 (84-165)||(20316295-20316376)
chr4 (198-250)||(34344500-34344552)
chr4 (109-166)||(17661840-17661897)
chr4 (69-166)||(17108608-17108705)
chr4 (93-166)||(25118000-25118074)
chr4 (114-166)||(9849862-9849914)
chr4 (69-165)||(12246674-12246770)
chr4 (99-166)||(11252268-11252335)
chr4 (131-166)||(23975730-23975765)
chr4 (93-166)||(10108137-10108211)
chr4 (69-166)||(16928814-16928911)
chr4 (114-166)||(14573339-14573392)
chr4 (93-166)||(19547185-19547258)
chr4 (114-166)||(9053896-9053948)
chr4 (114-166)||(25024997-25025049)
chr4 (95-166)||(18447575-18447646)
chr4 (94-166)||(7613626-7613699)
chr4 (84-165)||(10089570-10089651)
chr4 (114-162)||(19883666-19883715)
chr4 (114-166)||(20828293-20828346)
chr4 (130-166)||(1832224-1832260)
chr4 (95-166)||(11512161-11512233)
chr4 (114-166)||(19556692-19556744)
[»] chr1 (24 HSPs)
chr1 (69-166)||(14235394-14235491)
chr1 (69-166)||(26652468-26652563)
chr1 (93-166)||(10063094-10063167)
chr1 (94-166)||(27116357-27116429)
chr1 (97-166)||(27911955-27912025)
chr1 (114-166)||(16786247-16786300)
chr1 (114-166)||(21848516-21848569)
chr1 (94-166)||(26101750-26101823)
chr1 (93-166)||(31260760-31260833)
chr1 (95-166)||(17016967-17017039)
chr1 (95-165)||(13267736-13267807)
chr1 (96-166)||(16915332-16915403)
chr1 (199-250)||(44407448-44407499)
chr1 (69-166)||(33192242-33192339)
chr1 (114-166)||(7881685-7881738)
chr1 (114-166)||(15526950-15527003)
chr1 (94-166)||(15542442-15542515)
chr1 (114-166)||(15811599-15811652)
chr1 (83-156)||(24464518-24464590)
chr1 (114-166)||(25959611-25959664)
chr1 (114-162)||(35133778-35133827)
chr1 (95-166)||(18527631-18527703)
chr1 (95-166)||(21450657-21450729)
chr1 (95-166)||(22507509-22507581)
[»] chr3 (16 HSPs)
chr3 (84-166)||(3002947-3003029)
chr3 (114-166)||(26092794-26092846)
chr3 (196-250)||(47165461-47165515)
chr3 (115-166)||(18735425-18735477)
chr3 (95-166)||(19387985-19388057)
chr3 (114-166)||(20886759-20886811)
chr3 (95-166)||(31284039-31284111)
chr3 (95-166)||(8881536-8881607)
chr3 (114-166)||(3114863-3114916)
chr3 (114-166)||(5509959-5510012)
chr3 (113-166)||(15669438-15669491)
chr3 (93-162)||(23054711-23054779)
chr3 (69-164)||(8765566-8765661)
chr3 (69-164)||(13906693-13906788)
chr3 (95-166)||(13938981-13939053)
chr3 (114-166)||(28326288-28326340)
[»] scaffold0072 (1 HSPs)
scaffold0072 (69-166)||(38181-38278)
[»] chr5 (20 HSPs)
chr5 (98-166)||(17831583-17831651)
chr5 (69-160)||(24263860-24263951)
chr5 (94-166)||(28254781-28254853)
chr5 (197-250)||(37278276-37278329)
chr5 (114-166)||(26253359-26253411)
chr5 (112-166)||(18939410-18939465)
chr5 (95-164)||(19761716-19761785)
chr5 (69-166)||(19006958-19007056)
chr5 (95-166)||(19052991-19053063)
chr5 (114-160)||(34488753-34488800)
chr5 (112-166)||(18227502-18227556)
chr5 (69-166)||(23387657-23387754)
chr5 (113-166)||(26348332-26348386)
chr5 (118-166)||(15520865-15520914)
chr5 (113-166)||(23338831-23338884)
chr5 (93-166)||(29989135-29989208)
chr5 (114-166)||(17336480-17336532)
chr5 (95-166)||(20860229-20860301)
chr5 (95-166)||(22845930-22846002)
chr5 (114-166)||(28280172-28280224)
[»] chr2 (19 HSPs)
chr2 (113-166)||(32130854-32130907)
chr2 (93-166)||(34369217-34369291)
chr2 (93-166)||(8501644-8501717)
chr2 (69-166)||(17199417-17199513)
chr2 (113-166)||(32138067-32138120)
chr2 (69-166)||(32141501-32141598)
chr2 (93-162)||(32438814-32438883)
chr2 (114-166)||(16042815-16042867)
chr2 (114-166)||(29717510-29717562)
chr2 (113-167)||(18553178-18553233)
chr2 (69-166)||(25537446-25537543)
chr2 (93-166)||(27871175-27871249)
chr2 (69-166)||(34574403-34574500)
chr2 (114-166)||(19198631-19198684)
chr2 (115-164)||(22627277-22627326)
chr2 (95-166)||(25532126-25532198)
chr2 (114-166)||(25922495-25922547)
chr2 (95-166)||(27907657-27907729)
chr2 (114-166)||(30682357-30682409)
[»] scaffold0005 (1 HSPs)
scaffold0005 (114-166)||(243984-244037)
[»] scaffold0062 (1 HSPs)
scaffold0062 (111-166)||(41688-41743)
[»] scaffold0637 (1 HSPs)
scaffold0637 (96-166)||(7276-7346)
[»] scaffold0016 (1 HSPs)
scaffold0016 (69-166)||(4714-4811)
[»] scaffold0258 (1 HSPs)
scaffold0258 (94-166)||(20385-20458)
[»] scaffold0043 (1 HSPs)
scaffold0043 (137-166)||(88614-88643)
[»] scaffold0056 (1 HSPs)
scaffold0056 (95-166)||(22926-22998)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 35861574 - 35861668
Alignment:
Q  71 gtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||  ||||||  | |||||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  35861574 gtaatgttttctatatttaagtcatgtaattctactttttccaaaacatagcaatc-tagggtgttttgatgtaattcacaaagaaatcatgcaaa 35861668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 28904077 - 28904174
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | ||||||||| || ||||    |||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  28904077 ttgtaatgttttctatatttgagtcatgtaattatatttttcctgaaacatagcaattatatgatgttttgatgtaattcacgaacaaatcatgcaaa 28904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 13833713 - 13833809
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 165  Q
    ||||||||||||  ||||||  | ||| ||||| |||||||  ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||    
T  13833713 ttgtaatgttttctatattttagtcatataattatacttttcccaaaacataacaattctaaggtgttttgatgtaattcacaaataaatcatgcaa 13833809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 14077066 - 14077013
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  14077066 aaaacatagcaattttatggtgttttgatgtaattcatgaagaaatcatgcaaa 14077013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 24090988 - 24091084
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| |||| |||||||||||||||| || || | ||||| ||||||||| |||||||||||||||    
T  24090988 ttgtaatgttttctatatttgagtc-tgtaattctagttttctcaaaacatagcaattttaggggggtttgaagtaattcacgaagaaatcatgcaaa 24091084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 24851054 - 24851151
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  | ||||| | ||| |||||||| | ||  ||||||||||||||| || | ||||||||||||||||||||| ||||||||||||    
T  24851054 ttgtaatgttttctacatttgagtcatataattctattcttcccaaaacatagcaattttaggatgttttgatgtaattcacaaataaatcatgcaaa 24851151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 24518741 - 24518793
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||| ||||| || |||||||| |||||||||||||||||||||||||||    
T  24518741 aaacataacaattttaaggtgttttcatgtaattcacaaagaaatcatgcaaa 24518793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 15176567 - 15176638
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  ||||||||||||||| || ||  |||||| ||||||||| |||||||||||||||    
T  15176567 tgtaattctagttttcccaaaacatagcaattttaggggtttttgaagtaattcacgaagaaatcatgcaaa 15176638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 17649757 - 17649692
Alignment:
Q  101 tctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| || ||||||| ||||| || | ||||||||||||||| || |||||||||||||||    
T  17649757 tctacttttctcgaaacatatcaattctaggatgttttgatgtaatttacgaagaaatcatgcaaa 17649692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 24109169 - 24109241
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  || |||||||||||| || || ||||| || |||||||||||||||||||||||||    
T  24109169 tgtaattctagttttcccagaacatagcaattttagggggtttttgaagtaattcacaaagaaatcatgcaaa 24109241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 24381481 - 24381533
Alignment:
Q  115 aacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  24381481 aacatagcaattttagggtgtttttgatgtaattcacgaagaaatcatgcaaa 24381533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 17976182 - 17976128
Alignment:
Q  112 caaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| || |  |||||||||||||||||||  |||||||||||||||    
T  17976182 caaaacatagcatttcttgggtgttttgatgtaattcaataagaaatcatgcaaa 17976128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 18570516 - 18570419
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| ||||  |||||||||||||||  | || ||||| || ||||||||| |||||||||||||||    
T  18570516 ttgtaatgttttctatatttgagtc-tgtaattctagttttcccaaaacatagcaatttgagggggtttttgaagtaattcacgaagaaatcatgcaaa 18570419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 7985080 - 7985007
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| | || || ||||||||||||| || |||||| |||| ||||||||| ||||||||| |||||    
T  7985080 atgtaattctattcttctcgaaacatagcaattttagggtgttcttgaagtaattcacgaagaaatcaagcaaa 7985007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 14271784 - 14271731
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||| |||| || |||||| |||||||||||||| |||||||||||||||    
T  14271784 aaacatagaaattttagggtgttcttgatgtaattcacgaagaaatcatgcaaa 14271731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 19784938 - 19784987
Alignment:
Q  118 atagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  19784938 atagcaattttagggtgtttttgatgtaattcacgaagaaatcatgcaaa 19784987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 30117812 - 30117865
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||| |||| ||||||||| |||||||||||||||    
T  30117812 aaacatagcaattttagggtgttcttgaggtaattcacgaagaaatcatgcaaa 30117865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 30832901 - 30832829
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||| | ||||||||||||| || |  ||||| || ||||||||| |||||||||||||||    
T  30832901 tgtaattctagtttttccgaaacatagcaattttaggaggtttttgaagtaattcacgaagaaatcatgcaaa 30832829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 44462714 - 44462766
Alignment:
Q  198 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    |||||||||||  |||  |||||||||||||||||||||||| | ||||||||    
T  44462714 cactacaagaataatgcccatttgccagggattttgacaaggacatgaaaccc 44462766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 44470245 - 44470297
Alignment:
Q  198 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    |||||||||||  |||  |||||||||||||||||||||||| | ||||||||    
T  44470245 cactacaagaataatgcccatttgccagggattttgacaaggacatgaaaccc 44470297  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 32759955 - 32759859
Alignment:
Q  70 tgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||  | ||||| | |||||||||||||||||  ||||||||||||||| || | |||||||||||||||||| |||||||||||||||    
T  32759955 tgtaatgttttctaaatttgagtcatgtaattctacttttcccaaaacatagcaattctaggatgttttgatgtaattcacgaagaaatcatgcaaa 32759859  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 16175758 - 16175673
Alignment:
Q  77 tttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 162  Q
    ||||| ||||||| | ||||||||||||||||   |||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  16175758 ttttttatatttgagtcatgtaattctactttccccaaaacatagtaattctatggtgttttgatgtaattcacgaagaaatcatg 16175673  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 3018260 - 3018211
Alignment:
Q  197 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaa 246  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3018260 acactacaagaaatctgttcatttgccagggattttgacaaggccttgaa 3018211  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 10822223 - 10822127
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||  |  ||||||||||| |||| | |||||||||||||| || ||||||||||||||||| || |||||||||||||||    
T  10822223 ttgtaatgttttctatatttttgttatgtaattctaattttcttaaaacatagcaattctagggtgttttgatgtaatt-acgaagaaatcatgcaaa 10822127  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 27961156 - 27961104
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  27961156 aaacatagcaattctagggtgttttgatgtaattcacgaagaaatcatgcaaa 27961104  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 16167791 - 16167712
Alignment:
Q  83 atatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 162  Q
    ||||||| | |||||||||||| ||||  || ||||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  16167791 atatttgagtcatgtaattctaattttcccataacatagtaattatagggtgttttgatgtaattcttaaagaaatcatg 16167712  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 17383720 - 17383648
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| ||||  ||||||||||||||| || || ||||||| ||||||| | |||||||||||||||    
T  17383720 atgtaattctagttttcccaaaacatagcaattttagggggttttgaagtaattcgcgaagaaatcatgcaaa 17383648  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 21079856 - 21079927
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | ||| | | |||||| |||| ||||||||||||||||||||||  |||||||||||||||    
T  21079856 tgtaattctattatttccgatacatagaaattttatggtgttttgatgtaattcaagaagaaatcatgcaaa 21079927  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 20404167 - 20404217
Alignment:
Q  116 acatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||| ||||| |||| |||||||||||||||||| |||||||||||||||    
T  20404167 acataacaattttatgatgttttgatgtaattcacgaagaaatcatgcaaa 20404217  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 22564659 - 22564756
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||  | || || ||||||||||||| || |||||| |||||||||||||| |||||||||||||||    
T  22564659 ttgtaatgttttctatatttgagtc-tgtaattctgttcttctcgaaacatagcaattttagggtgttgttgatgtaattcacgaagaaatcatgcaaa 22564756  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 14723671 - 14723575
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| |||||   ||||||||||||| || ||  |||||| ||||||||| |||||||||||||||    
T  14723671 ttgtaatgttttctatatttgagtc-tgtaattctagtttttctgaaacatagcaattttaggggtttttgaagtaattcacgaagaaatcatgcaaa 14723575  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 9339113 - 9339184
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | ||| | ||||||||||||| || ||| |||||||||||||||  |||||||||| ||||    
T  9339113 tgtaattctattctttccgaaacatagcaattttagggtattttgatgtaattcatgaagaaatcattcaaa 9339184  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 9507426 - 9507472
Alignment:
Q  116 acatagcaattatatggtgtttt-gatgtaattcacaaagaaatcat 161  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  9507426 acatagcaattatagggtgtttttgatgtaattcacgaagaaatcat 9507472  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 21060560 - 21060606
Alignment:
Q  116 acatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 162  Q
    ||||||||||| || |||||||||||||||||||  |||||||||||    
T  21060560 acatagcaattttacggtgttttgatgtaattcaagaagaaatcatg 21060606  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 30356247 - 30356153
Alignment:
Q  72 taatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||  |||| || | |||||||||||| | ||  | ||||||| ||||| || | ||||||||||||||||||  ||||||||||||||    
T  30356247 taatgttttatatatatgagtcatgtaattctattattcccgaaacatatcaattctaggatgttttgatgtaattcacggagaaatcatgcaaa 30356153  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 9898021 - 9898074
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||| |||||||||||||| |||||||||| ||||    
T  9898021 aaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatacaaa 9898074  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 13216459 - 13216512
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||| |||||||| || |||||||| |||||||||| |||||||||||||||||    
T  13216459 aaacttagcaattctagggtgtttttgatgtaattcgcaaagaaatcatgcaaa 13216512  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 3358085 - 3358033
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||||||||| |||||||   |||||||||||||||    
T  3358085 aaacatagcaatattatggtgttttgacgtaattcgtgaagaaatcatgcaaa 3358033  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 21760542 - 21760614
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | ||||||||||||| || || | |||||| ||||||||| |||||||||||||||    
T  21760542 tgtaattctagttttcgcgaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 21760614  T

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Target: scaffold0086 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 12903 - 13000
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||||||| | ||||| |||||||||||    ||||||||||||| || | |||||||||||||||||||||||||||| |||||    
T  12903 ttgtaatgtttttcatatttgagtcatgttattctacttttcctgaaacatagcaattctaggatgttttgatgtaattcacaaagaaatcaagcaaa 13000  T

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Target: scaffold0086; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 12054 - 11983
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | ||  ||||||||||||||| || ||||||||||| ||||| || |||||||||| ||||    
T  12054 tgtaattctattcttcccaaaacatagcaattctagggtgttttgatttaatttacgaagaaatcatacaaa 11983  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 2506920 - 2507017
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | |||||||||||| | ||  |||||||||| |||| || ||||||||||| |||||||| |||||||||||||||    
T  2506920 ttgtaatgttttctatatttgagtcatgtaattctattattcccaaaacatagaaattttagggtgttttgatctaattcacgaagaaatcatgcaaa 2507017  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 9722394 - 9722341
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  9722394 aaaacatagcaattatagggtgttttgatgtaatccacaaagaaatcatgcaaa 9722341  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 46419943 - 46419995
Alignment:
Q  198 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  46419943 cactacaagaaatctgttcatttgtcagggattttgacaaggccttgaaaccc 46419995  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 1254850 - 1254902
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  1254850 aaacatagcaattatagggtgttttgatgtaattcacgaagaaatcaagcaaa 1254902  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 8038983 - 8038909
Alignment:
Q  93 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||| |  ||||||||||||| || ||||||||||||||||||| ||||||||||| ||||    
T  8038983 catgtaattctagtttttcctgaaacatagcaattctagggtgttttgatgtaattcaaaaagaaatcatccaaa 8038909  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 5046988 - 5047040
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  5046988 aaacatagcaattttagagtgttttgatgtaattcacgaagaaatcatgcaaa 5047040  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 4900454 - 4900537
Alignment:
Q  83 atatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||| | |||||||| ||||||||  | |||||||||||||||| ||||||||||  |||||  | |||||||||||||||    
T  4900454 atatttgtgtcatgtaatcctacttttccctaaacatagcaattatagggtgttttgacctaattaccgaagaaatcatgcaaa 4900537  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 2505807 - 2505733
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatgg-tgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||  | ||||||||||||| || || |||||||||||||||||  |||||||||||||||    
T  2505807 catgtaattctagttttcccgaaacatagcaattttaagggtgttttgatgtaattcaagaagaaatcatgcaaa 2505733  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 8317551 - 8317648
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| ||||| | |||||||||||||  | |||||||| || ||||||||| |||||||||||||||    
T  8317551 ttgtaatgttttctatatttgagtc-tgtaattctagtttttccgaaacatagcaatttgagggtgtttttgaagtaattcacgaagaaatcatgcaaa 8317648  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 24751333 - 24751404
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||   |||||||  ||||| || |||||||||||||||||||| |||||| ||||||||    
T  24751333 catgtaattctatttttccaaaaacat--caattctagggtgttttgatgtaattcacgaagaaaccatgcaaa 24751404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 9079036 - 9079089
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||||  ||||| || ||||||||| |||||||||||||||    
T  9079036 aaacatagcaattatatgaggtttttgaagtaattcacgaagaaatcatgcaaa 9079089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 20176057 - 20175992
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaat 158  Q
    |||||||||||| ||||  | ||||| ||||||| || |||||||||||||||||||  |||||||    
T  20176057 catgtaattctaattttcccgaaacacagcaattctagggtgttttgatgtaattcatgaagaaat 20175992  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 21502797 - 21502744
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||||| || ||||||||| |||||||||||||||    
T  21502797 aaacatagcaattctagggtgtttttgaggtaattcacgaagaaatcatgcaaa 21502744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 3736300 - 3736235
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatca 160  Q
    ||||||||||| |||| || |||||  |||||| || |||||| ||||||||||||||||||||||||    
T  3736300 atgtaattctatttttctcgaaaca--gcaattttagggtgttattgatgtaattcacaaagaaatca 3736235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 7306169 - 7306117
Alignment:
Q  198 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    |||||||||||  |||  ||||||||||||||||||||||||  |||||||||    
T  7306169 cactacaagaataatgaccatttgccagggattttgacaagggtttgaaaccc 7306117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 13252792 - 13252864
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  ||||||||| ||||| || || | |||||| ||||||||| |||||||||||||||    
T  13252792 tgtaattctagttttcccaaaacataacaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 13252864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 15611152 - 15611243
Alignment:
Q  72 taatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgca 164  Q
    |||||||||| ||||||| ||  |||||||||| | ||  | ||||||||||| | ||  |||||||| |||||||||| |||||||||||||    
T  15611152 taatgttttttatatttgagct-tgtaattctattcttcccgaaacatagcaaatttagagtgttttgttgtaattcacgaagaaatcatgca 15611243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 26249210 - 26249282
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||   |||||||||||||| || || ||||| || ||||||||| |||||||||||||||    
T  26249210 tgtaattctagttttcctaaaacatagcaattttagggggtttttgaagtaattcacgaagaaatcatgcaaa 26249282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 13588661 - 13588608
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13588661 aaaacatagcaattatagggtgttttgatgtaatccacaaagaaatcatgcaaa 13588608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 20316295 - 20316376
Alignment:
Q  84 tatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 165  Q
    |||||| | |||||||||||| ||||| |||||||| | |||| ||||||||||||||||||||||  ||||||||||||||    
T  20316295 tatttgagtcatgtaattctagtttttccaaaacattgtaattttatggtgttttgatgtaattcaagaagaaatcatgcaa 20316376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 34344552 - 34344500
Alignment:
Q  198 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  34344552 cactacaagaaatctgttcatttgtcagggattttgacaaggccttgaaaccc 34344500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 17661897 - 17661840
Alignment:
Q  109 tttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||||||| || |||||||||||||||||||  |||||||||||||||    
T  17661897 tttcaaaacatagcaattctagggtgttttgatgtaattcaagaagaaatcatgcaaa 17661840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 17108705 - 17108608
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||||||| | | |||||||||| ||||  | ||||||||||||| ||||| ||||| || ||||||||| |||||||||||||||    
T  17108705 ttgtaatgttttttatatttgagtc-tgtaattctagttttcccgaaacatagcaattttatggggtttttgaagtaattcacgaagaaatcatgcaaa 17108608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 25118000 - 25118074
Alignment:
Q  93 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||| |  ||||||||||||| || |||||||||||||||||||  |||||||||||||||    
T  25118000 catgtaattctagtttttcctgaaacatagcaattctaaggtgttttgatgtaattcaagaagaaatcatgcaaa 25118074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 9849862 - 9849914
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||||| ||||||||||| |||||||||||||||    
T  9849862 aaacatagcaattttagggtgtttttatgtaattcacgaagaaatcatgcaaa 9849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 12246674 - 12246770
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 165  Q
    ||||||||||||  ||| ||| | ||||||||| || | ||  | ||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  12246674 ttgtaatgttttctatacttgagtcatgtaattatattcttcccgaaatatagcaattttagggtattttgatgtaattcacaaagaaatcatgcaa 12246770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 11252268 - 11252335
Alignment:
Q  99 attctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||| ||||| | ||||||||||||| || || ||||||| ||||||||| |||||||||||||||    
T  11252268 attctagtttttccgaaacatagcaattttagggggttttgaagtaattcacgaagaaatcatgcaaa 11252335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 23975765 - 23975730
Alignment:
Q  131 ggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||||||||||||||||||||||    
T  23975765 ggtgttttgatgtaattcacaaagaaatcatgcaaa 23975730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 10108211 - 10108137
Alignment:
Q  93 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| || ||||| || |||||||| ||||||| ||||||||||||||||| |  |||||||||||||||    
T  10108211 catgtaattataatttttccagaaacatagtaattatagggtgttttgatgtaattgaagaagaaatcatgcaaa 10108137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 16928911 - 16928814
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| ||||| ||||||||||||||| || ||  |||| || ||||||||| |||||||||||||||    
T  16928911 ttgtaatgttttctatatttgagtc-tgtaattctagtttttccaaaacatagcaattttaagggatttttgaagtaattcacgaagaaatcatgcaaa 16928814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 14573392 - 14573339
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  14573392 aaacatagcaattttagtgtgtttttgatgtaattcacaaagaaatcatgcaaa 14573339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 19547185 - 19547258
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||  | ||||| | ||||| || |||||||||||||||||||  |||||||||||||||    
T  19547185 catgtaattctagttttcccgaaacaaaacaattctagggtgttttgatgtaattcaagaagaaatcatgcaaa 19547258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 9053948 - 9053896
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || ||| |||||||||||| ||| |||||||||||||||    
T  9053948 aaacatagcaattttagggtattttgatgtaatgcacgaagaaatcatgcaaa 9053896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 25025049 - 25024997
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||| |||| || |||||||| ||||||||||| |||||||||||||||    
T  25025049 aaacatagtaattttagggtgtttttatgtaattcacgaagaaatcatgcaaa 25024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 18447575 - 18447646
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | || || ||||||| ||||| || |||||||| ||||||||||| || ||||||||||||    
T  18447575 tgtaattctattcttctcgaaacataacaattttagggtgttttaatgtaattcacgaacaaatcatgcaaa 18447646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 7613699 - 7613626
Alignment:
Q  94 atgtaattctacttttt-tcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| ||||| || |||||| ||||||||  |||||||||| || |||||  |||||||||||||||    
T  7613699 atgtaattctagtttttctcgaaacatggcaattatggggtgttttgacgtgattcaagaagaaatcatgcaaa 7613626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 10089651 - 10089570
Alignment:
Q  84 tatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 165  Q
    |||||| | |||||||||| |  ||| ||||||||||| |||| || |||||||| || |||||||  ||||||||||||||    
T  10089651 tatttgagtcatgtaattccaggtttctcaaaacatagaaattctagggtgttttaatataattcaagaagaaatcatgcaa 10089570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 19883666 - 19883715
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatg 162  Q
    |||||||| ||||||| |||||||| |||||||||||| |||||||||||    
T  19883666 aaacatagaaattatagggtgtttttgatgtaattcacgaagaaatcatg 19883715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 20828293 - 20828346
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || || ||| |||||||||||||| |||||||||||||||    
T  20828293 aaacatagcaattttagggcgttcttgatgtaattcacgaagaaatcatgcaaa 20828346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 1832224 - 1832260
Alignment:
Q  130 tggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||||||| || ||||||||||||    
T  1832224 tggtgttttgatgtaattcacgaaaaaatcatgcaaa 1832260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 11512161 - 11512233
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | || || ||| ||||||||| || |||||||| ||| |||| |||||||||||||||||||    
T  11512161 tgtaattctattcttctcgaaagatagcaattctagggtgtttttgatataatccacaaagaaatcatgcaaa 11512233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 19556692 - 19556744
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| ||| || || ||||||| ||||||||| |||||||||||||||    
T  19556692 aaacatagctattttagggggttttgaagtaattcacgaagaaatcatgcaaa 19556744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 14235394 - 14235491
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | ||||||||| || | ||  | ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  14235394 ttgtaatgttttctatatttgagtcatgtaattatattattcccgaaacatagcaattttagggtgttttgatgtaattcacgaagaaatcatgcaaa 14235491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 26652563 - 26652468
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||| |||||  ||||||| | |||||||||||| ||||  |||||  ||| ||||||| ||||||||||||||||| || |||||||||||||||    
T  26652563 ttgtaacgttttatatatttgagtcatgtaattctatttttcccaaaa--tagaaattataaggtgttttgatgtaatttacgaagaaatcatgcaaa 26652468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 10063094 - 10063167
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||||||||||||| ||||| || | ||||||||||||||| || || ||||||| ||||    
T  10063094 catgtaattctatttttttcaaaacataacaattctaggatgttttgatgtaatttacgaataaatcatacaaa 10063167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 27116357 - 27116429
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| | ||  | ||||||||||||| || ||| |||| |||||||||||||||||||||||||||    
T  27116357 atgtaattctattcttcccgaaacatagcaattctagggtttttttatgtaattcacaaagaaatcatgcaaa 27116429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 27912025 - 27911955
Alignment:
Q  97 taattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||| |||||||  ||||||||||||| || |||||||||||||||||||  || ||||||||||||    
T  27912025 taattctagttttttcggaaacatagcaattctagggtgttttgatgtaattcaagaaaaaatcatgcaaa 27911955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 16786247 - 16786300
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||||||||||| ||| |||||||| |||||||||||||||    
T  16786247 aaacatagcaattttatggtgtttttgatctaattcacgaagaaatcatgcaaa 16786300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 21848569 - 21848516
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||| |||| || |||||||| ||||||||||||||||||||||||||||    
T  21848569 aaacatagaaattttagggtgtttttgatgtaattcacaaagaaatcatgcaaa 21848516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 26101823 - 26101750
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| | ||  | |||||||||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  26101823 atgtaattctattcttcccgaaacatagcaattatagggtgtttttgatgtagttcacgaagaaatcatgcaaa 26101750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 31260760 - 31260833
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| || ||||  ||||||||| ||||| || ||||||||||||||||| |  |||||||||||||||    
T  31260760 catgtaattatagttttcccaaaacatatcaattttaaggtgttttgatgtaatttaagaagaaatcatgcaaa 31260833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 17016967 - 17017039
Alignment:
Q  95 tgtaattctacttttttc-aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||||| |||||||||||||| ||  ||||||||||||||| ||  || ||||||||||||    
T  17016967 tgtaattctagttttttccaaaacatagcaattctagagtgttttgatgtaatccaagaataaatcatgcaaa 17017039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 13267807 - 13267736
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaa 165  Q
    |||||||||| ||||  ||||||||| ||||| ||||| ||||| || ||||||||| ||||||||||||||    
T  13267807 tgtaattctagttttcccaaaacataacaattttatggggtttttgaagtaattcacgaagaaatcatgcaa 13267736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 16915332 - 16915403
Alignment:
Q  96 gtaattctacttttttcaaaacatagcaattatat-ggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||| || |||||||||||||  |  ||| |||||| ||||||||| |||||||||||||||    
T  16915332 gtaattctacttttctcgaaacatagcaatttgagaggttttttgaagtaattcacgaagaaatcatgcaaa 16915403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 44407448 - 44407499
Alignment:
Q  199 actacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    ||||||||||||||| |||||||||| ||||||||||| || | ||||||||    
T  44407448 actacaagaaatatgctcatttgccaaggattttgacagggacatgaaaccc 44407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 33192339 - 33192242
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| | ||  | ||||||||||||| || |||||||| || ||||||||||||||||||| |||||    
T  33192339 ttgtaatgttttctatatttgagtc-tgtaattctattcttccctaaacatagcaattttagggtgtttttgaagtaattcacaaagaaatcaagcaaa 33192242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 7881738 - 7881685
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || | |||||| |||||||||||| |||||||||||||||    
T  7881738 aaacatagcaattttaggatgtttttgatgtaattcacgaagaaatcatgcaaa 7881685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 15526950 - 15527003
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || | |||| ||| ||||||||||||||||||||||||||    
T  15526950 aaacatagcaattttaggatgttcttgttgtaattcacaaagaaatcatgcaaa 15527003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 15542442 - 15542515
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| ||||| | ||||||||||||| || || | |||||| ||||||||| ||||||||| |||||    
T  15542442 atgtaattctagtttttccgaaacatagcaattttaaggggtttttgaagtaattcacgaagaaatcacgcaaa 15542515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 15811599 - 15811652
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || || ||| |||||||||||||| |||||||||||||||    
T  15811599 aaacatagcaattttagggggttcttgatgtaattcacgaagaaatcatgcaaa 15811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 24464590 - 24464518
Alignment:
Q  83 atatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaa 156  Q
    ||||||| | ||||||||||||||||   | |||||||||||||||||| ||||||||| ||| |||| |||||    
T  24464590 atatttgagtcatgtaattctactttcc-cgaaacatagcaattatatgttgttttgatataactcacgaagaa 24464518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 25959611 - 25959664
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||||||||| ||||| |||||||| ||||||||| |||||    
T  25959611 aaacatagcaattttatggtgttcttgatttaattcacgaagaaatcaagcaaa 25959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 35133827 - 35133778
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatg 162  Q
    ||||||||||||| || |||||| |||||||||||||| |||||||||||    
T  35133827 aaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatg 35133778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 18527631 - 18527703
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | ||||||||||||| || || ||||| || ||||||||| |||||||||||||||    
T  18527631 tgtaattctagttttcccgaaacatagcaattttagggggtttttgaagtaattcacgaagaaatcatgcaaa 18527703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 21450729 - 21450657
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | ||||||||||||| || || | |||||| ||||||||| |||||||||||||||    
T  21450729 tgtaattctaattttaccgaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 21450657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 22507509 - 22507581
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | ||||||||||||| || || ||||| || ||||||||| |||||||||||||||    
T  22507509 tgtaattctagttttcccgaaacatagcaattttagggggtttttgaagtaattcacgaagaaatcatgcaaa 22507581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 3003029 - 3002947
Alignment:
Q  84 tatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||| | |||||||||||||||||    ||||||||||||| || |||||||||||||||||||  |||||||||||||||    
T  3003029 tatttgagtcatgtaattctacttttcctgaaacatagcaattctacggtgttttgatgtaattcaagaagaaatcatgcaaa 3002947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 26092846 - 26092794
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  26092846 aaacatagcaattctatggtgttttgatgtaattcaagaagaaatcatgcaaa 26092794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 47165461 - 47165515
Alignment:
Q  196 aacactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    |||||||||||||||||| |||||||| ||||||||||||| || | ||||||||    
T  47165461 aacactacaagaaatatgctcatttgctagggattttgacagggacatgaaaccc 47165515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 18735425 - 18735477
Alignment:
Q  115 aacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| || | |||| ||||||||||||||||||||||||||||||    
T  18735425 aacatagcaattttaggttgttcttgatgtaattcacaaagaaatcatgcaaa 18735477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 19387985 - 19388057
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | ||  ||||||||| ||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  19387985 tgtaattctattcttcccaaaacatatcaattttatggtgttcttgatgtaattcacgaagaaatcattcaaa 19388057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 20886811 - 20886759
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||| |||||| || || ||||||||||||||||| |||||||||||||||    
T  20886811 aaacatggcaattttaaggcgttttgatgtaattcacgaagaaatcatgcaaa 20886759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 31284039 - 31284111
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | ||  ||||||||||||||| || |||||||| ||||||||| || |||||||||||||||    
T  31284039 tgtaattctattattcccaaaacatagcaattttagggtgtttttgatgtaattgacgaagaaatcatgcaaa 31284111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 8881536 - 8881607
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||| || ||||  ||||| ||||||||| || || ||||||| ||||||||| |||||||||||||||    
T  8881536 tgtaattatagttttcccaaaatatagcaattttagggggttttgaagtaattcacgaagaaatcatgcaaa 8881607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 3114863 - 3114916
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||| ||||||| |||||| |||||||||||||||    
T  3114863 aaacatagcaattttagggtgttcttgatgttattcacgaagaaatcatgcaaa 3114916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 5510012 - 5509959
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || | |||| |||||||||||||| |||||||||||||||    
T  5510012 aaacatagcaattttaggatgttcttgatgtaattcacgaagaaatcatgcaaa 5509959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 15669438 - 15669491
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||| || ||||||| | ||||||||| |||||||| |||||||    
T  15669438 aaaacatagcaattttagggtgtttcgttgtaattcaaaaagaaatgatgcaaa 15669491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 23054711 - 23054779
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 162  Q
    |||| ||||||||||||| | ||||||| ||||| || | | |||||||||||||||| |||||||||||    
T  23054711 catgaaattctacttttt-cgaaacatatcaattttaagatattttgatgtaattcacgaagaaatcatg 23054779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 8765661 - 8765566
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgca 164  Q
    ||||||||||||  ||||||| | | |||||||||| |||| |  ||||||||||||| || || ||||| || ||||||||| |||||||||||||    
T  8765661 ttgtaatgttttctatatttgagtc-tgtaattctagttttcttgaaacatagcaattttagggggtttttgaagtaattcacgaagaaatcatgca 8765566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 13906693 - 13906788
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaa-ttcacaaagaaatcatgca 164  Q
    ||||||||||||  ||||||| | | |||||||||| | ||  | ||||||||||||| || | ||||||| ||||| |||||||||||||||||||    
T  13906693 ttgtaatgttttctatatttgagtc-tgtaattctattcttcccgaaacatagcaattttaggatgttttgttgtaaattcacaaagaaatcatgca 13906788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 13938981 - 13939053
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||| ||||| ||||| | |||||| |||||| ||||| ||||| || ||||||||| |||||||||||||||    
T  13938981 tgtagttctagtttttccgaaacattgcaattttatggggtttttgaagtaattcacgaagaaatcatgcaaa 13939053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 28326288 - 28326340
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||  ||| || ||||||||||||||||| || |||||||||||||||    
T  28326288 aaacatagttattttagggtgttttgatgtaattgacgaagaaatcatgcaaa 28326340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 38278 - 38181
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | |||||||||||  ||||  | ||||||| ||||| || |||||||||||||||||||| ||||||||| |||||    
T  38278 ttgtaatgttttctatatttgagtcatgtaattctctttttcccgaaacataacaattttagggtgttttgatgtaattcacgaagaaatcacgcaaa 38181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 17831651 - 17831583
Alignment:
Q  98 aattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||| |||||||  ||||||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  17831651 aattatacttttcccaaaacatagcaattttagggtgttttgatatatttcacaaagaaatcatgcaaa 17831583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 24263860 - 24263951
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatca 160  Q
    ||||||||||||  ||||||| | | |||||||||| | ||| ||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  24263860 ttgtaatgttttctatatttgagtc-tgtaattctattctttccaaaacatagcaattttagggtgttcttgatgtaattcacaaagaaatca 24263951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 28254853 - 28254781
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||  | ||||||||||||| | | ||||||||||| ||||||| |||||||||||||||    
T  28254853 atgtaattctacttttcccgaaacatagcaattctttagtgttttgatgcaattcacgaagaaatcatgcaaa 28254781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 37278276 - 37278329
Alignment:
Q  197 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaaccc 250  Q
    |||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||    
T  37278276 acactacaagaaatttgtccatttgccaaggattttgacagggccttgaaaccc 37278329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 26253411 - 26253359
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||||||||||||||||| || ||||||||||||    
T  26253411 aaacatagcaattttagggtgttttgatgtaattcacgaaaaaatcatgcaaa 26253359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 18939465 - 18939410
Alignment:
Q  112 caaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||| || |||||| |||||||||||||| |||||||||||||||    
T  18939465 caaaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatgcaaa 18939410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 19761716 - 19761785
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgca 164  Q
    |||||||||| | ||  ||||||||||||||| || | ||||||| |||||||||| |||||||||||||    
T  19761716 tgtaattctattcttcccaaaacatagcaattttaggatgttttgttgtaattcacgaagaaatcatgca 19761785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 19006958 - 19007056
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaatt--atatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| |||| ||||||||||||||||  ||  |||||||| | ||||||||| ||||||| |||||||    
T  19006958 ttgtaatgttttctatatttgagtc-tgtaattctaattttctcaaaacatagcaatttgatggggtgttttaaagtaattcacgaagaaattatgcaaa 19007056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 19053063 - 19052991
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  ||||||||||||||| || || | |||||| ||||||||| |||||||||||||||    
T  19053063 tgtaattctagttttcccaaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 19052991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 34488800 - 34488753
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatca 160  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||    
T  34488800 aaacatagcaattttagggtgttcttgatgtaattcacaaagaaatca 34488753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 18227556 - 18227502
Alignment:
Q  112 caaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||| |||||||| || | ||||| |||||||||||| |||||||||||||||    
T  18227556 caaaacctagcaattttaggatgtttagatgtaattcacgaagaaatcatgcaaa 18227502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 23387657 - 23387754
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | ||||| |||| |||| | |||||||||||||| ||||| | ||||||  |||||||| |||||||||||||||    
T  23387657 ttgtaatgttttctatatttgagtc-tgtaaatctagttttcttaaaacatagcaattttatggggcttttgaaataattcacgaagaaatcatgcaaa 23387754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 26348386 - 26348332
Alignment:
Q  113 aaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||| ||||||||| || |||| |||||||||||||||| |||||||||||||||    
T  26348386 aaaaaatagcaattctagggtggttttgatgtaattcacgaagaaatcatgcaaa 26348332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 15520914 - 15520865
Alignment:
Q  118 atagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  15520914 atagcaattttatggtgtttttgatgtaattcaagaagaaatcatgcaaa 15520865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 23338884 - 23338831
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||| ||| | ||||| | ||||||||| |||||||||||||||    
T  23338884 aaaacatagcaattttatagggttttaaagtaattcacgaagaaatcatgcaaa 23338831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 29989135 - 29989208
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||| |  |||||||| ||||| ||  || ||||||||||||||| ||||||||||| ||||    
T  29989135 catgtaattctaatttctcaaaaacataacaattctaaagtattttgatgtaattcaaaaagaaatcatacaaa 29989208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 17336480 - 17336532
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||| ||||| || |||||||||||||||||||  || ||||||||||||    
T  17336480 aaacatatcaattctagggtgttttgatgtaattcaagaataaatcatgcaaa 17336532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 20860301 - 20860229
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| |||| || ||||||||||||| || || ||||| || ||||||||| || ||||||||||||    
T  20860301 tgtaattctagttttctcgaaacatagcaattttagggggtttttgaagtaattcacgaataaatcatgcaaa 20860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 22845930 - 22846002
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| | ||  ||||||||||||||| || |||||| |||||||||||||| |||| |||| |||||    
T  22845930 tgtaattctattcttcccaaaacatagcaattttagggtgttcttgatgtaattcacgaagagatcaagcaaa 22846002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 28280224 - 28280172
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||| ||||| ||  ||||||||||||||||||  |||||||||||||||    
T  28280224 aaacataacaattctagagtgttttgatgtaattcaagaagaaatcatgcaaa 28280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 32130854 - 32130907
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||| ||||    
T  32130854 aaaacataacaattataggatgttttgatgtaattcacaaagaaatcatacaaa 32130907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 34369291 - 34369217
Alignment:
Q  93 catgtaattcta-cttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| |||||  | ||||||||||||| |||||||||||||| |||||||  | |||||||||||||    
T  34369291 catgtaattctagcttttcccgaaacatagcaattttatggtgttttgatataattcaagatgaaatcatgcaaa 34369217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 8501644 - 8501717
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| ||||    |||||||  |||| || ||||||||||||||||||||||| ||||||||||||    
T  8501644 catgtaattctatttttcaagaaacatataaattttagggtgttttgatgtaattcacaaataaatcatgcaaa 8501717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 17199513 - 17199417
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| ||||  |||||||||||||||  | || ||||||| ||||||||  |||||||||||||||    
T  17199513 ttgtaatgttttctatatttgagtc-tgtaattctagttttcccaaaacatagcaatttgagggggttttgaagtaattcatgaagaaatcatgcaaa 17199417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 32138067 - 32138120
Alignment:
Q  113 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||| |||||||| | |||||||| ||||||||| |||||||||||||||    
T  32138067 aaaacataacaattataggatgttttgacgtaattcacgaagaaatcatgcaaa 32138120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 32141501 - 32141598
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | |||||||||| | | ||    ||||||||||||| || | |||||||||| ||||||| |||||||||||||||    
T  32141501 ttgtaatgttttctatatttgagtcatgtaattcaattcttcctgaaacatagcaattctaagatgttttgatgaaattcacgaagaaatcatgcaaa 32141598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 32438814 - 32438883
Alignment:
Q  93 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 162  Q
    ||||||| |||||||||  | ||||||||||||| || |||||||  ||||||||||| |||||||||||    
T  32438814 catgtaactctacttttcccgaaacatagcaattctagggtgtttaaatgtaattcacgaagaaatcatg 32438883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 16042815 - 16042867
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||||| ||||||||||  |||||||||||||||    
T  16042815 aaacatagcaattttagggtgttttaatgtaattcaagaagaaatcatgcaaa 16042867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 29717510 - 29717562
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || ||| |||||||||||||||| ||||||| |||||||    
T  29717510 aaacatagcaattctaaggttttttgatgtaattcacgaagaaataatgcaaa 29717562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 18553233 - 18553178
Alignment:
Q  113 aaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaag 167  Q
    |||||||||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  18553233 aaaacatagcaattttatggtgttcttaatgtaattcatgaagaaatcatgcaaag 18553178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 25537543 - 25537446
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | |||||||||| ||||  | ||||||||||||| || || | |||||| ||||||||| |||||||||||||||    
T  25537543 ttgtaatgttttctatatttgagtc-tgtaattctagttttcccgaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 25537446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 27871249 - 27871175
Alignment:
Q  93 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||| |||||||  ||||||| ||||| ||  ||||||||||||||||||   ||||||||||||||    
T  27871249 catgtaattctaattttttccgaaacataacaattctagagtgttttgatgtaattcaaggagaaatcatgcaaa 27871175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 34574500 - 34574403
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| |  ||||||||||| ||||  | |||| |||||||| || || | |||||| |||||||||||||||||||||||||    
T  34574500 ttgtaatgttttatatatttgagt-atgtaattctagttttcccgaaacttagcaattttaggggggttttgaagtaattcacaaagaaatcatgcaaa 34574403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 19198631 - 19198684
Alignment:
Q  114 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| |  |||||| |||||| |||||||||||||||||||||||    
T  19198631 aaacatagcaatttttaggtgttcttgatgaaattcacaaagaaatcatgcaaa 19198684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 22627326 - 22627277
Alignment:
Q  115 aacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgca 164  Q
    |||||||||||| || | ||||||| |||||||||| |||||||||||||    
T  22627326 aacatagcaattttaggatgttttgttgtaattcacgaagaaatcatgca 22627277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 25532198 - 25532126
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | ||||||||||||| || |||||| |||| | ||||||| |||||||||||||||    
T  25532198 tgtaattctagttttcccgaaacatagcaattttagggtgttcttgaagcaattcacgaagaaatcatgcaaa 25532126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 25922547 - 25922495
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||  | || ||||||| ||||||||| |||||||||||||||    
T  25922547 aaacatagcaatttgagggggttttgaagtaattcacgaagaaatcatgcaaa 25922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 27907657 - 27907729
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | ||||||||||||| || ||| |||| || ||||||||| |||||||||||||||    
T  27907657 tgtaattctagttttcccgaaacatagcaattttagggtttttttgaagtaattcacgaagaaatcatgcaaa 27907729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 30682357 - 30682409
Alignment:
Q  114 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| || |||||| ||||||| ||||  |||||||||||||||    
T  30682357 aaacatagcaattctagggtgttatgatgtagttcaagaagaaatcatgcaaa 30682409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 243984 - 244037
Alignment:
Q  114 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  243984 aaacatagcaattttagtgtgtttttgatgtaattcacaaagaaatcatgcaaa 244037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 41688 - 41743
Alignment:
Q  111 tcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||||||||| || ||| |||||| |||| |||| |||||||||||||||    
T  41688 tcaaaacatagcaattttagggttttttgaggtaaatcacgaagaaatcatgcaaa 41743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 7346 - 7276
Alignment:
Q  96 gtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||| ||||  | ||||||||||||| || |||||||  || |||||||| |||||||||||||||    
T  7346 gtaattctaattttcccgaaacatagcaattctagggtgtttacatctaattcacgaagaaatcatgcaaa 7276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 4811 - 4714
Alignment:
Q  69 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||  ||||||| | | ||||| |||| |||| | |||||||||||||| ||||| | ||||||  |||||||| |||||||||||||||    
T  4811 ttgtaatgttttctatatttgagtc-tgtaaatctagttttcttaaaacatagcaattttatggggcttttgaaataattcacgaagaaatcatgcaaa 4714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 20385 - 20458
Alignment:
Q  94 atgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||| ||||  |||||||||||||||  | || ||||| || ||||||||| |||||||||||||||    
T  20385 atgtaattctagttttcccaaaacatagcaatttgagggggtttttgaagtaattcacgaagaaatcatgcaaa 20458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 88614 - 88643
Alignment:
Q  137 ttgatgtaattcacaaagaaatcatgcaaa 166  Q
    ||||||||||||||||||||||||||||||    
T  88614 ttgatgtaattcacaaagaaatcatgcaaa 88643  T

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Target: scaffold0056 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 22998 - 22926
Alignment:
Q  95 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 166  Q
    |||||||||| ||||  | |||||||||||||||| || ||||| || ||| ||||| |||||||||||||||    
T  22998 tgtaattctagttttcccgaaacatagcaattataaggagtttttgaagtatttcacgaagaaatcatgcaaa 22926  T

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