View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_35 (Length: 246)
Name: NF16933_high_35
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 30049464 - 30049252
Alignment:
| Q |
16 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049464 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
30049365 |
T |
|
| Q |
116 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30049364 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctct |
30049265 |
T |
|
| Q |
216 |
tgtacatgattca |
228 |
Q |
| |
|
||||||||||||| |
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|
| T |
30049264 |
tgtacatgattca |
30049252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 7162417 - 7162205
Alignment:
| Q |
16 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
115 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
7162417 |
cactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatg |
7162318 |
T |
|
| Q |
116 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctct |
215 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7162317 |
aaatttgacattgatatgctttgctcttccatgttgaattggatttttggcagttgctatagctgatttgttgtcacaccatagcacaattggttcctct |
7162218 |
T |
|
| Q |
216 |
tgtacatgattca |
228 |
Q |
| |
|
|||| |||||||| |
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|
| T |
7162217 |
tgtatatgattca |
7162205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 196551 - 196763
Alignment:
| Q |
16 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
196551 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
196650 |
T |
|
| Q |
116 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
196651 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctct |
196750 |
T |
|
| Q |
216 |
tgtacatgattca |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
196751 |
tgtacatgattca |
196763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 3945718 - 3945506
Alignment:
| Q |
16 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3945718 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
3945619 |
T |
|
| Q |
116 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3945618 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctct |
3945519 |
T |
|
| Q |
216 |
tgtacatgattca |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3945518 |
tgtacatgattca |
3945506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 39949712 - 39949924
Alignment:
| Q |
16 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39949712 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
39949811 |
T |
|
| Q |
116 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctct |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39949812 |
aaattttacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctct |
39949911 |
T |
|
| Q |
216 |
tgtacatgattca |
228 |
Q |
| |
|
||||||||||||| |
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|
| T |
39949912 |
tgtacatgattca |
39949924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 22365346 - 22365134
Alignment:
| Q |
16 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22365346 |
cactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatg |
22365247 |
T |
|
| Q |
116 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22365246 |
aaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctct |
22365147 |
T |
|
| Q |
216 |
tgtacatgattca |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22365146 |
tgtacatgattca |
22365134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
99 |
gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
163 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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