View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_36 (Length: 243)
Name: NF16933_high_36
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44541774 - 44541548
Alignment:
| Q |
1 |
tgaaacttttactgctgttggacaaattgaattttactataaacagtttcctgagaatatgaaaagcattggagggtcacttttctattgtggcatggca |
100 |
Q |
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| T |
44541774 |
tgaaacttttactgctgttggacaaattgaattttactataaacagtttcctgagaatatgaaaagcattggagggtcacttttctattgtggcatggca |
44541675 |
T |
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| Q |
101 |
ggttctagttatttaagtgcttttcttgtttctgttgttcatagaacaacttccaaatctgctacaggaaattggttaccagaggatcttaataaaggga |
200 |
Q |
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| T |
44541674 |
ggttctagttatttaagtgcttttcttgtttctgttgttcatagaacaacttccaaatctgctacaggaaattggttaccagaggatcttaataaaggga |
44541575 |
T |
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| Q |
201 |
gattggaatatttttattacatgattg |
227 |
Q |
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| T |
44541574 |
gattggaatatttttattacatgattg |
44541548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 44563127 - 44562918
Alignment:
| Q |
17 |
gttggacaaattgaattttactataaacagtttcctgagaatatgaaaagcattggagggtcacttttctattgtggcatggcaggttctagttatttaa |
116 |
Q |
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| T |
44563127 |
gttggacaagttgaattttactacaaacagtttcctgagaatatgagaagtcttgcagggtcactgtttttttgtggcttggcactatcaagttatttta |
44563028 |
T |
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| Q |
117 |
gtgcttttcttgtttctgttgttcatagaacaacttccaaatctgctacaggaaattggttaccagaggatcttaataaagggagattggaatattttta |
216 |
Q |
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| T |
44563027 |
gtagtttgttgattacaattattcataggttgacggttaaatctgcaacagggaattggttaccacaggatttgaatgaagggagattggattactttta |
44562928 |
T |
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| Q |
217 |
ttacatgatt |
226 |
Q |
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| T |
44562927 |
ttacatgatt |
44562918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 44553083 - 44553027
Alignment:
| Q |
15 |
ctgttggacaaattgaattttactataaacagtttcctgagaatatgaaaagcattg |
71 |
Q |
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| T |
44553083 |
ctgttgcacagattgaattttactataaacaatttcctgagaacatgagaagcattg |
44553027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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