View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_5 (Length: 502)
Name: NF16933_high_5
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 45210234 - 45209765
Alignment:
| Q |
18 |
aagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaat |
117 |
Q |
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| T |
45210234 |
aagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaat |
45210135 |
T |
|
| Q |
118 |
ttcactttgaaaacaccaggaccaggttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaag |
217 |
Q |
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| T |
45210134 |
ttcactttgaaaacaccaggaccaggttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaag |
45210035 |
T |
|
| Q |
218 |
caatttgtaagtatattttgtaaacctacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcactta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45210034 |
caatttgtaagtatattttgtaaacctacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcac--- |
45209938 |
T |
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| Q |
318 |
attatagcatagactatttctatgacaacacatattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209937 |
-ttatagcatagactatttctatgacaacacatattatgatttacttataccttaattaacattactctgatttgttgcagtgacatggaaggtgacatg |
45209839 |
T |
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| Q |
418 |
cacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaata |
491 |
Q |
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| T |
45209838 |
cacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaata |
45209765 |
T |
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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 393 - 482
Target Start/End: Original strand, 5007817 - 5007906
Alignment:
| Q |
393 |
ttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctata |
482 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||| | ||||||| |||| | |||||| || ||||||||||||||||||| |
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| T |
5007817 |
ttgcagtgacatggaatgttacatgcacatattcacaatttctggctcagaaaactccgacttgctgtgtctccctctcatctttctata |
5007906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 480
Target Start/End: Original strand, 5550497 - 5550602
Alignment:
| Q |
375 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
474 |
Q |
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|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||| ||| || ||| |||||||||| |
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| T |
5550497 |
taacataactctgattgtttgcagtgacatggaatgtgacatgcacatattcacaatttttagctcaacaaactccaacttgttgtgttgccctctcatc |
5550596 |
T |
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| Q |
475 |
tttcta |
480 |
Q |
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||||| |
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| T |
5550597 |
attcta |
5550602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 349 - 482
Target Start/End: Complemental strand, 5540344 - 5540216
Alignment:
| Q |
349 |
atattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacct |
448 |
Q |
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||||||||||||||| | |||||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| || |||| || |
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| T |
5540344 |
atattatgatttactaagaccttaac----attactctgatttttt-cagtgacatggaatgtgagatgcacatattcacaatttctagctccgaaaact |
5540250 |
T |
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| Q |
449 |
ccaaattgctgcgtttccctctcatctttctata |
482 |
Q |
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|||| ||| || || | |||||||| ||||||| |
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| T |
5540249 |
ccaacttgttgtgtcgctctctcatcattctata |
5540216 |
T |
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