View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_high_8 (Length: 422)
Name: NF16933_high_8
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 32582701 - 32582299
Alignment:
| Q |
16 |
cagtaacaaagaaactgaagcaaaaagaagaagagattcagagaatggagaaacaaaatctaatgcttcaagaaaaagcgaaaacactgattatggagaa |
115 |
Q |
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| T |
32582701 |
cagtaacaaagaaactgaagcaaaaagaagaagagattcagagaatggagaaacaaaatctaatgcttcaagaaaaagcgaaaacactgattatggagaa |
32582602 |
T |
|
| Q |
116 |
tcagatttggagagaaatggctttgactaacgaatctgctgtaaacacgttacgtaacgaattagaacaagttctggcgcatgttgagaatcaccgtaac |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32582601 |
tcagatttggagagaaatggctttgacaaacgaatctgctgtaaacacgttacgtaacgaattagaacaagttctggcgcatgttgagaatcaccgtaac |
32582502 |
T |
|
| Q |
216 |
gatgaagatgcagcgtcgagttgtggaagtaaccaccatgtcaaggaggaggtggtggtggaagaagcgtcatcgccggtggttgggaagttgtgcagcg |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32582501 |
gatgacgatgcagcgtcgagttgtggaagtaaccaccatgtcaaggaggaggtggtggtggaagaagcgtcatcgccggtggttgggaagttgtgcagcg |
32582402 |
T |
|
| Q |
316 |
gttgtggagaaagggagtcagtagtgctgttactgccatgtaggcatttgtgtttgtgtacaatgtgtgggacccacattcgtaattgccccctttgctt |
415 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
32582401 |
gttgtggggaaagggagtcagtagtgctgttactgccatgtaggcatttgtgtttgtgtacaatgtgtgggacccacattcgtaattgccctctttgttt |
32582302 |
T |
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| Q |
416 |
ctc |
418 |
Q |
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||| |
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| T |
32582301 |
ctc |
32582299 |
T |
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