View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_11 (Length: 401)
Name: NF16933_low_11
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 48085502 - 48085153
Alignment:
| Q |
17 |
aaaaccagtactcaagaacttggcatgacaaaccactagctatggaatacaaaacaaaagattaatggataaattaaagggacacagataaagaaaatac |
116 |
Q |
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| T |
48085502 |
aaaaccagtactcaagaacttggcatgacaaaccactagctatggaatacaaaacaaaag--------------------gacacagataaagaaaatac |
48085423 |
T |
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| Q |
117 |
acacataaactaacnnnnnnncattaaccaaatgtcttggatggattgatcaagtcctggaatctaaggccatgatagtgctgagattcatgggatacat |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085422 |
acacataaactaacaaaaaaacattaaccaaatgtcttggatggattgatcaagtcctggaatctaaggccatgatagtgctgagattcatgggatacat |
48085323 |
T |
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| Q |
217 |
gtactgagcactgcccctaaggatttggttgactatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttggg |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48085322 |
gtactgagcactgcccctaaggattcggttgactatgattttgtttgccttttcagatggatggaatgcatcccaaaaagcattaagttctctgtttggg |
48085223 |
T |
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| Q |
317 |
cacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgctacctttg |
386 |
Q |
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| T |
48085222 |
cacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgctacctttg |
48085153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 48102536 - 48102491
Alignment:
| Q |
254 |
attttgtttgccttttcagatggatggaatgcatcccaaaatgcat |
299 |
Q |
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| T |
48102536 |
attttgtttgccttttcagatggatggaatgcatcccaaaatgcat |
48102491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 1809590 - 1809526
Alignment:
| Q |
260 |
tttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt |
324 |
Q |
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| T |
1809590 |
tttgccttttcagatggatggaatggatcccaaaatacatacaagtctctgttagggcacaagtt |
1809526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 7385568 - 7385635
Alignment:
| Q |
257 |
ttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt |
324 |
Q |
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| T |
7385568 |
ttgtttgccttttcagatggatggaatgcatcccaaaatgcatttaagtctctatttgagcacaagtt |
7385635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 35376267 - 35376405
Alignment:
| Q |
248 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaa |
347 |
Q |
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| T |
35376267 |
actatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcacaagtttgaaaggggtgtgcatagtccaa |
35376366 |
T |
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| Q |
348 |
gtccattgtatggcccttgtccacagcatgctacctttg |
386 |
Q |
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| T |
35376367 |
tcccattgtaagggccttgtccacaacaagctatctttg |
35376405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 35357711 - 35357791
Alignment:
| Q |
247 |
gactatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttga |
327 |
Q |
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|||||||||| || | || |||||||||||||| ||||||||||||||||||| ||| | || ||||||||||| ||||| |
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| T |
35357711 |
gactatgattctgctagctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttga |
35357791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 35364521 - 35364581
Alignment:
| Q |
266 |
ttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttg |
326 |
Q |
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| T |
35364521 |
ttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttg |
35364581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 379
Target Start/End: Original strand, 6339168 - 6339260
Alignment:
| Q |
287 |
tcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgct |
379 |
Q |
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| T |
6339168 |
tcccaaaatgcataaagatccctattagggcacaagttagaagctggagtacatagtccaactccattgaatggtccttgaccacaacatgct |
6339260 |
T |
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