View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_12 (Length: 399)
Name: NF16933_low_12
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 8087545 - 8087906
Alignment:
| Q |
10 |
attattctcctaaaatgaaatacacaataaggatttatttactatatgtcatatttgtagtctaacgaacaaggtatacaataaaagtgattgaatataa |
109 |
Q |
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| T |
8087545 |
attattctcctaaaatgaaatacacaataaggatttatttactatatgtcatgtttgtggtctaatgaacaaggtatacaataaaagtgattgaatataa |
8087644 |
T |
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| Q |
110 |
tcatatgtgttagtggcgtgtcggtgttgaagggtgttggacttcaacaccgacgacgcctttaatatgaagtataagtgctatataggtttaaagaagt |
209 |
Q |
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| T |
8087645 |
tcatatgtgttagtggcgtgtcggtg----------ttggacttcaacaccgacgatgcctttaatatgaagtataagtgctatataggtttaaagaagt |
8087734 |
T |
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| Q |
210 |
tctagtaatatcatacttgacttgacatgatagttaaatatgattggaacttggaagctcgtgtagaaagtatatagatggtgtatgcttacttttttcc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8087735 |
tctagtaatatcatacttgacttgacatgatagttaaatatgattggaacttggaagcttgtgtagaaagtatatagatggtgtatgcttacttttttcc |
8087834 |
T |
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| Q |
310 |
tttggaagtggtataataatgttgcattaagaatgaaattctgaggtaatcagaaacaatcttgtaatggat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8087835 |
tttggaagtggtataataatgttgcattaagaatgaaattctgaggtaatcagaaacaatcttgtaatggat |
8087906 |
T |
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