View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_low_13 (Length: 393)

Name: NF16933_low_13
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_low_13
NF16933_low_13
[»] chr8 (12 HSPs)
chr8 (10-372)||(1781597-1781959)
chr8 (281-352)||(18608732-18608803)
chr8 (13-75)||(1771035-1771097)
chr8 (282-348)||(10341065-10341131)
chr8 (282-352)||(25953263-25953333)
chr8 (282-352)||(34108259-34108329)
chr8 (282-348)||(43956957-43957023)
chr8 (282-352)||(14315015-14315085)
chr8 (282-352)||(14318719-14318789)
chr8 (282-352)||(18494280-18494350)
chr8 (282-352)||(26981980-26982050)
chr8 (282-352)||(26987093-26987163)
[»] chr4 (12 HSPs)
chr4 (282-348)||(18737192-18737258)
chr4 (282-348)||(18670870-18670936)
chr4 (290-369)||(47071446-47071525)
chr4 (282-347)||(32429392-32429457)
chr4 (290-348)||(18716527-18716585)
chr4 (282-352)||(30019954-30020024)
chr4 (282-348)||(34128345-34128411)
chr4 (282-352)||(34279595-34279665)
chr4 (290-349)||(54859264-54859323)
chr4 (290-352)||(14643834-14643896)
chr4 (282-352)||(3424803-3424874)
chr4 (282-352)||(35096058-35096128)
[»] chr1 (13 HSPs)
chr1 (282-352)||(17414640-17414710)
chr1 (282-352)||(35626202-35626272)
chr1 (282-352)||(10186683-10186753)
chr1 (282-352)||(43358783-43358853)
chr1 (284-352)||(19310856-19310924)
chr1 (290-348)||(21431780-21431838)
chr1 (282-348)||(44524130-44524196)
chr1 (282-352)||(1187858-1187927)
chr1 (282-352)||(3465503-3465573)
chr1 (282-352)||(3468097-3468167)
chr1 (282-352)||(28574327-28574397)
chr1 (282-352)||(28598339-28598409)
chr1 (282-348)||(13654365-13654433)
[»] chr3 (22 HSPs)
chr3 (284-352)||(18024252-18024320)
chr3 (282-352)||(20891089-20891159)
chr3 (282-349)||(3187561-3187628)
chr3 (282-352)||(5458116-5458186)
chr3 (282-352)||(5481592-5481662)
chr3 (282-352)||(6858159-6858229)
chr3 (282-352)||(8458341-8458411)
chr3 (282-352)||(8464780-8464850)
chr3 (282-348)||(29827454-29827520)
chr3 (282-348)||(49784526-49784592)
chr3 (282-352)||(1302349-1302419)
chr3 (282-352)||(4049837-4049907)
chr3 (290-352)||(6853056-6853118)
chr3 (282-352)||(10584962-10585032)
chr3 (282-352)||(10591399-10591469)
chr3 (282-352)||(10673042-10673112)
chr3 (282-352)||(10678157-10678227)
chr3 (282-352)||(31076506-31076576)
chr3 (282-352)||(31081611-31081681)
chr3 (282-352)||(33702704-33702774)
chr3 (282-352)||(33703329-33703399)
chr3 (282-352)||(4054971-4055041)
[»] chr7 (12 HSPs)
chr7 (282-348)||(4181490-4181556)
chr7 (282-352)||(14610394-14610464)
chr7 (291-351)||(5440393-5440453)
chr7 (291-351)||(5449403-5449463)
chr7 (293-352)||(37459945-37460004)
chr7 (282-352)||(12851704-12851774)
chr7 (282-352)||(12856819-12856889)
chr7 (282-352)||(26051051-26051121)
chr7 (282-352)||(26056164-26056234)
chr7 (282-352)||(26060410-26060480)
chr7 (282-352)||(26065523-26065593)
chr7 (282-347)||(11056655-11056720)
[»] chr6 (9 HSPs)
chr6 (282-352)||(24508932-24509002)
chr6 (282-348)||(2887520-2887586)
chr6 (282-352)||(21936784-21936854)
chr6 (282-348)||(2889242-2889308)
chr6 (282-352)||(11183270-11183340)
chr6 (290-352)||(24509741-24509803)
chr6 (282-352)||(21275803-21275873)
chr6 (282-350)||(21937600-21937668)
chr6 (282-352)||(20752222-20752292)
[»] chr2 (7 HSPs)
chr2 (282-346)||(716297-716361)
chr2 (282-352)||(30283545-30283615)
chr2 (282-352)||(14917486-14917556)
chr2 (282-348)||(16284467-16284534)
chr2 (282-352)||(17720630-17720700)
chr2 (282-352)||(45120416-45120486)
chr2 (282-326)||(42780214-42780258)
[»] chr5 (10 HSPs)
chr5 (282-352)||(13556409-13556479)
chr5 (282-341)||(35369006-35369065)
chr5 (290-361)||(43540854-43540925)
chr5 (282-352)||(2022994-2023064)
chr5 (282-352)||(4555683-4555753)
chr5 (282-352)||(9877643-9877713)
chr5 (282-352)||(39903875-39903945)
chr5 (282-352)||(39908988-39909058)
chr5 (282-352)||(9872528-9872598)
chr5 (290-346)||(25184130-25184186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (290-352)||(173396-173458)
[»] scaffold0223 (1 HSPs)
scaffold0223 (282-351)||(2124-2193)
[»] scaffold0006 (1 HSPs)
scaffold0006 (282-348)||(144126-144194)


Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 1781597 - 1781959
Alignment:
Q  10 attattctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcctcgtnnnnnnnttattgttggtgttcagtcattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  1781597 attattctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcctcgtaaaaaaattattgttggtgttcagtcattt 1781696  T
Q  110 cgactattcaaccacatgttgacaagccacttgcaaagcaaatagaatgatgaatttggtgatagaaacgataagtcttttactcaaatacaataatgac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781697 cgactattcaaccacatgttgacaagccacttgcaaagcaaatagaatgatgaatttggtgatagaaacgataagtcttttactcaaatacaataatgac 1781796  T
Q  210 aaaataatcgctctcaaacgtttcaacaaacacatggagtacacacatgaagcaaattaaaataattgtgaaactcatgaattagagaattggtggatga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781797 aaaataatcgctctcaaacgtttcaacaaacacatggagtacacacatgaagcaaattaaaataattgtgaaactcatgaattagagaattggtggatga 1781896  T
Q  310 ttttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781897 ttttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtc 1781959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 18608803 - 18608732
Alignment:
Q  281 aactcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18608803 aactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 18608732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 1771035 - 1771097
Alignment:
Q  13 attctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcc 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  1771035 attccacatatggtcaatggtaaagagtaataaaagattcatagactttaattgcatccatcc 1771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 10341131 - 10341065
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||    
T  10341131 actcatgcattagagaatttatggatgatttagagtaagagaatgagggagaattatgttgttaatg 10341065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 25953333 - 25953263
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  25953333 actcatgcattagacaattgatggatgatttagagtatgagaatgatggagaattatgttgttaatgtaac 25953263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 34108259 - 34108329
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  34108259 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 34108329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 43957023 - 43956957
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||    
T  43957023 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatg 43956957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 14315085 - 14315015
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  14315085 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 14315015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 14318789 - 14318719
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  14318789 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 14318719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 18494350 - 18494280
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  18494350 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 18494280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 26982050 - 26981980
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26982050 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26981980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 26987163 - 26987093
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26987163 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 18737192 - 18737258
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  18737192 actcatgaattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatg 18737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 18670870 - 18670936
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  18670870 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatg 18670936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 47071446 - 47071525
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgt 369  Q
    |||||||||||| | ||| |||| |||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||    
T  47071446 attagagaattgatagataatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaatttctgttcttgt 47071525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 32429457 - 32429392
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaat 347  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  32429457 actcatgcattaaagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaat 32429392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 18716527 - 18716585
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    |||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||    
T  18716527 attagagaattgatggatgatttagagtaagagaatgggggagaattatgttgttaatg 18716585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 30020024 - 30019954
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||  | | ||||||||||||||||||||    
T  30020024 actcatgcattagagaattgatggatgatttagagtaagagaatggtgaagaattatgttgttaatgtaac 30019954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 34128411 - 34128345
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||| ||||| |||||||||| |||||||||||||||||| ||||||| ||||||||    
T  34128411 actcatgcattagaaaattgatggatgatttagagtaagagaatgagggagaattatgatgttaatg 34128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 34279665 - 34279595
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| ||| |||||| ||||||||||| |||| | ||||||||||||||||||||    
T  34279665 actcatgcattagagaattgatggttgatttagagtaagagaacgaggaagaattatgttgttaatgtaac 34279595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 54859323 - 54859264
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgt 349  Q
    |||||||||||| |||||||||| ||| |||||||||||||| ||| |||||||||||||    
T  54859323 attagagaattgatggatgatttagagcaagagaatgagggagaatcatgttgttaatgt 54859264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 14643896 - 14643834
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    |||||||||||| |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  14643896 attagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttgatgtaac 14643834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 3424874 - 3424803
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggata-attatgttgttaatgtaac 352  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||||||| |  |||||||||||| |||||    
T  3424874 actcatgcattagagaattaatggatgatttagagtaagagaatgagggagatcttatgttgttaaagtaac 3424803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 35096058 - 35096128
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  35096058 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 35096128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 17414710 - 17414640
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  17414710 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 17414640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 35626202 - 35626272
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35626202 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 35626272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10186753 - 10186683
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  10186753 actcatgcattagagaattgatggatgatttagagtaagagaatgatggagaattatgttgttaatgtaac 10186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 43358783 - 43358853
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  43358783 actcatgcattagagaattgatggataatttagagtaagagaatgagggagaattatgttgttaatgtaac 43358853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 19310856 - 19310924
Alignment:
Q  284 tcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||| |||||||||||| ||||||||||  ||||||||||||||||| |||||| |||||||||||||    
T  19310856 tcatgcattagagaattgatggatgatttatagtaagagaatgagggagaattatattgttaatgtaac 19310924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 21431838 - 21431780
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    |||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||    
T  21431838 attagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatg 21431780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 44524196 - 44524130
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||| ||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  44524196 actcatgcattagagaattgatggatgatttaaagtaagagaatgatggagaattatgttgttaatg 44524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 1187858 - 1187927
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  1187858 actcatgcattaaagaattgatggatgatttagagtaagagaatga-ggagatttatgttgttaatgtaac 1187927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 3465503 - 3465573
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  3465503 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 3465573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 3468097 - 3468167
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  3468097 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 3468167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 28574327 - 28574397
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  28574327 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 28574397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 28598339 - 28598409
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  28598339 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 28598409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 13654365 - 13654433
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagt--aagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||  |||||||||| |||   |||||||||||||| ||||||||||||||||    
T  13654365 actcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatg 13654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 18024320 - 18024252
Alignment:
Q  284 tcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||| |||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18024320 tcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 18024252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 20891089 - 20891159
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| ||||||| |||||||||| |||||||||||| |||||||    
T  20891089 actcatgcattagagaattgatggatgatttagagtaagcgaatgagggagaattatgttgtttatgtaac 20891159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 3187628 - 3187561
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgt 349  Q
    ||||||| |||| ||||||| | |||||||| |||||||||||||||||| |||||||||||||||||    
T  3187628 actcatgcattaaagaattgatagatgatttagagtaagagaatgagggagaattatgttgttaatgt 3187561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 5458186 - 5458116
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  5458186 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 5458116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 5481662 - 5481592
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  5481662 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 5481592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 6858229 - 6858159
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  6858229 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 6858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 8458341 - 8458411
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  8458341 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 8458411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 8464780 - 8464850
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  8464780 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 8464850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 29827454 - 29827520
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||| || ||||||| |||||||||||||||||| ||||| ||| ||||||    
T  29827454 actcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaattaggttattaatg 29827520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 49784526 - 49784592
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    |||||||||||||||||||| | ||||||||  ||||| ||||||||||  ||||||||||||||||    
T  49784526 actcatgaattagagaattgatagatgatttaaagtaaaagaatgagggggaattatgttgttaatg 49784592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 1302419 - 1302349
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  1302419 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 1302349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 4049837 - 4049907
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  4049837 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 4049907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 6853118 - 6853056
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  6853118 attagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 6853056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10585032 - 10584962
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| |   ||||||||||||||||||||    
T  10585032 actcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaac 10584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10591469 - 10591399
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| |   ||||||||||||||||||||    
T  10591469 actcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaac 10591399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10673112 - 10673042
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  10673112 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 10673042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10678227 - 10678157
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  10678227 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 10678157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 31076576 - 31076506
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  31076576 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 31076506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 31081681 - 31081611
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  31081681 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 31081611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 33702774 - 33702704
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  33702774 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 33702704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 33703329 - 33703399
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  33703329 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 33703399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 4054971 - 4055041
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||| ||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  4054971 actcatgcattaaagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 4055041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 4181556 - 4181490
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||    
T  4181556 actcatgcattagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatg 4181490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 14610394 - 14610464
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||||||    
T  14610394 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaac 14610464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 5440453 - 5440393
Alignment:
Q  291 ttagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 351  Q
    ||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||    
T  5440453 ttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaa 5440393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 5449463 - 5449403
Alignment:
Q  291 ttagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 351  Q
    ||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||    
T  5449463 ttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaa 5449403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 37460004 - 37459945
Alignment:
Q  293 agagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||||||| |||||||    
T  37460004 agagaattgatggatgatttagagtaagagaatgtgggagaattatgttgttcatgtaac 37459945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 12851704 - 12851774
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  12851704 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 12851774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 12856819 - 12856889
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  12856819 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 12856889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 26051051 - 26051121
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26051051 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26051121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 26056164 - 26056234
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26056164 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26056234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 26060410 - 26060480
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26060410 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26060480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 26065523 - 26065593
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26065523 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26065593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 11056655 - 11056720
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaat 347  Q
    ||||||| |||| ||||||| ||||||||||  |||||||||||||   | |||||||||||||||    
T  11056655 actcatgcattaaagaattgatggatgatttaaagtaagagaatgataaagaattatgttgttaat 11056720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 24509002 - 24508932
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| |||||| ||||||| ||| ||||||||||||||||||||    
T  24509002 actcatgcattagagaattgatggatgatttagagtaaaagaatgatggagaattatgttgttaatgtaac 24508932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 2887520 - 2887586
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||| ||| |||||||||| |||||||||||||||||| |||||||||| |||||    
T  2887520 actcatgcattagagagttgatggatgatttagagtaagagaatgagggagaattatgttggtaatg 2887586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 21936854 - 21936784
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| | |||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  21936854 actcatgcattagagaattgatagatgatttagagtatgagaatgatggagaattatgttgttaatgtaac 21936784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 2889242 - 2889308
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||| ||| || ||||||| |||||||||||||||||| |||||||||| |||||    
T  2889242 actcatgcattagagagttgatgaatgatttagagtaagagaatgagggagaattatgttggtaatg 2889308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 11183340 - 11183270
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| || ||||||||| ||| ||||||    
T  11183340 actcatgcattagagaattgattgatgatttagagtaagagaatgagagagaattatgttattattgtaac 11183270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 24509741 - 24509803
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    |||||||||||| ||||||||||  ||||| ||||||| ||| ||||||||||||||||||||    
T  24509741 attagagaattgatggatgatttaaagtaaaagaatgatggagaattatgttgttaatgtaac 24509803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 21275803 - 21275873
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  21275803 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 21275873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 21937600 - 21937668
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgta 350  Q
    ||||||| ||| |||||||| |||||| ||| || ||||||| ||| ||| ||||||||||||||||||    
T  21937600 actcatgcatttgagaattgatggatgttttagaataagagagtgatggaaaattatgttgttaatgta 21937668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 20752292 - 20752222
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| || ||||||||| ||||||| ||  ||||||||||||  | | ||||||||||||||||||||    
T  20752292 actcatgcatcagagaattgatggatgacttatagtaagagaatggtgaagaattatgttgttaatgtaac 20752222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 716297 - 716361
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaa 346  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||    
T  716297 actcatgcattagagaattgatggatgatttagagtaagagaatgaaggagaattatgttgttaa 716361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 30283615 - 30283545
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| | |||||||| ||||||||||| || ||| ||||||||||||||||||||    
T  30283615 actcatgcattagagaattgattgatgatttagagtaagagaaggatggagaattatgttgttaatgtaac 30283545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 14917556 - 14917486
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  14917556 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 14917486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 16284467 - 16284534
Alignment:
Q  282 actcatgaattagagaattggtggatgatttt-gagtaagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||| ||| || |||||||| |||||||||||||||||| |||||| |||||||||    
T  16284467 actcatgcattagagagttgatgaatgattttagagtaagagaatgagggagaattatattgttaatg 16284534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 17720700 - 17720630
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  17720700 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 17720630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 45120416 - 45120486
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| ||| |||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  45120416 actcatgcattggagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 45120486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 42780214 - 42780258
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatg 326  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||    
T  42780214 actcatgcattagagaattgatggatgatttagagtaagagaatg 42780258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 13556479 - 13556409
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||||||    
T  13556479 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaac 13556409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 35369065 - 35369006
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgtt 341  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||| | |||||||||    
T  35369065 actcatgcattagagaattgatggatgatttagagtaagagaatgaggaagaattatgtt 35369006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 43540925 - 43540854
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttct 361  Q
    |||||||||||| | |||||||| |||||||||||||| ||| || |||||||||||||||||  |||||||    
T  43540925 attagagaattgatagatgatttagagtaagagaatgatggagaactatgttgttaatgtaacaaaatttct 43540854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 2022994 - 2023064
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||  | | ||||||||||||||||||||    
T  2022994 actcatgcattagagaattgatggatgatttagaataagagaatggtgaagaattatgttgttaatgtaac 2023064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 4555683 - 4555753
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||  |||||||||| |||||| ||||||  | | ||||||||||||||||||||    
T  4555683 actcatgcattagagaattaatggatgatttagagtaatagaatggtgaagaattatgttgttaatgtaac 4555753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 9877713 - 9877643
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  9877713 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 9877643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 39903875 - 39903945
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  39903875 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 39903945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 39908988 - 39909058
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  39908988 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 39909058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 9872598 - 9872528
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    ||||||| |||||||||||| |||||||||| || ||| |||||   | | ||||||||||||||||||||    
T  9872598 actcatgcattagagaattgatggatgatttagaataatagaattgtgaagaattatgttgttaatgtaac 9872528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 25184130 - 25184186
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaa 346  Q
    |||||||||||| |||||||||| |||||||||||||  | | || |||||||||||    
T  25184130 attagagaattgatggatgatttagagtaagagaatggtgaagaaatatgttgttaa 25184186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 173396 - 173458
Alignment:
Q  290 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 352  Q
    |||||||||||| |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  173396 attagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttgatgtaac 173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 2193 - 2124
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 351  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | |||||||||||||||||||    
T  2193 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaa 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 144126 - 144194
Alignment:
Q  282 actcatgaattagagaattggtggatgattttgagt--aagagaatgagggataattatgttgttaatg 348  Q
    ||||||| |||||||||||  |||||||||| |||   |||||||||||||| ||||||||||||||||    
T  144126 actcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatg 144194  T

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