View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_15 (Length: 387)
Name: NF16933_low_15
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Complemental strand, 44542147 - 44541766
Alignment:
| Q |
6 |
agcagcacagacttattgtttttcaagcacttcaatcaaatagacgaatgggaaacaccgacttcaagatacccggtgcatcctacactgtcttcttaat |
105 |
Q |
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| T |
44542147 |
agcaacacacacttcttgtttttcaagcactgcaatcaaatagacgaatgggaaacaccgacttcaagatacccggtgcatcctacactgtcttcttaat |
44542048 |
T |
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| Q |
106 |
gttaagcatgacattatggttaccaatctatgatagaatagttgttccttgtctccgaagattcaccgaaaaagaagctggcatcacagtccttcaaaga |
205 |
Q |
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| T |
44542047 |
gttaagcatgacattatggttaccaatctatgatagaatagttgttccttgtctccgaagattcaccgaaaaagaagctggcatcacagtccttcaaaga |
44541948 |
T |
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| Q |
206 |
attggtgttggaatatttctaggtatactaagcattcttgtatcagcatttgttgaaacacaaagaagacacttagctttaactaagcctattggaatgc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44541947 |
attggtgttggaatatttctaggtatactaagcattcttgtatcagcatttgttgaaacacaaagaagacacttagctttaactaagcctattggaatgc |
44541848 |
T |
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| Q |
306 |
aaccaagaaaaggcgcgatttcgtcgatgtctggtttttggttggttcctcagttgatactggctggatttgctgaaacttt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44541847 |
aaccaagaaaaggcgcgatttcgtcgatgtctggtttttggttggttcctcagttgatactggctggatttgctgaaacttt |
44541766 |
T |
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