View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_17 (Length: 370)
Name: NF16933_low_17
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 32961213 - 32960870
Alignment:
| Q |
16 |
atcactagaccaatcccaaaccacctagccataaagctctctctttagtctcaatgaatctttgaaccacaaagagaaaaatgtccctagccccaagtga |
115 |
Q |
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| T |
32961213 |
atcactagaccaatcccaatccacctagccataaagctctctctttagtctcaatgaatctttgaaccacaaagagaaaaatgtccctagccccaagtga |
32961114 |
T |
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| Q |
116 |
gaatgtgagataaagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttatcataacaattattgctttat |
215 |
Q |
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| T |
32961113 |
gaatgtgagataaagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttatcataacaattattgctttat |
32961014 |
T |
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| Q |
216 |
ttgtttaatgaataatgtactatatatggtagaattggtacaatatgttgttataatgactgtcttattagttcaacatctttgcatgcatgcaagtgaa |
315 |
Q |
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| T |
32961013 |
ttgtttaatgaataatgtactatatatggtagaattggtacaatatgttgttataatgactggcttatttgttcaacatctttgcatgcatgcaagtgaa |
32960914 |
T |
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| Q |
316 |
tttcttcacgataccc----acctggcatctcggtggacgatat |
355 |
Q |
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| T |
32960913 |
tttcttcacgatacccacctacctggcatctcggtggacgatat |
32960870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 7715736 - 7715803
Alignment:
| Q |
128 |
aagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttat |
195 |
Q |
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| T |
7715736 |
aagacaaacattccagttgtatgttgttgcttttgaggaatgcaattttattcgttcccaaagtttat |
7715803 |
T |
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