View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_low_2 (Length: 933)

Name: NF16933_low_2
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_low_2
NF16933_low_2
[»] chr5 (10 HSPs)
chr5 (217-362)||(25609813-25609958)
chr5 (445-610)||(25610622-25610785)
chr5 (445-610)||(25826704-25826866)
chr5 (363-443)||(25826897-25826977)
chr5 (363-443)||(25610512-25610591)
chr5 (802-885)||(25610843-25610926)
chr5 (133-213)||(25609599-25609679)
chr5 (738-782)||(25826513-25826557)
chr5 (833-876)||(25826398-25826441)
chr5 (752-793)||(25607821-25607862)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 2e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 25609813 - 25609958
Alignment:
Q  217 atagatgattttacaagggtatgctggatgaaattaaaatttgaagttgctgatatttttgttaattcaaattttgggttgaaaatcagtgtgaatgcaa 316  Q
    ||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25609813 atagatgattttacaagggtatgctgattgaaattaacatttgacgttgctgatatttttgttaattcaaattttgggttgaaaatcagtgtgaatgcaa 25609912  T
Q  317 aattcaaatgttaagattagataatggaagtgattacacctcagaa 362  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25609913 aattcaaatgttaagattagataatggaagtgaatacacctcagaa 25609958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 445 - 610
Target Start/End: Original strand, 25610622 - 25610785
Alignment:
Q  445 caattctagaaacagttttttggtcttaactttttaattaaattaggatgctttcaattcttttttaggatattaagatattctgttaatagggagattt 544  Q
    |||||||||||||||||||||||| |||| |||  |||||||||||||||||||||| | | |||||| ||||||||||||| |||||||||| | ||||    
T  25610622 caattctagaaacagttttttggttttaaatttg-aattaaattaggatgctttcaaatatgttttagtatattaagatattttgttaataggaa-attt 25610719  T
Q  545 agatgttatcgattctgctttcgtagattaaggatttaagatattctgttataggagatttagctg 610  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||    
T  25610720 agatgttatcgattctgtttttgtagattaaggatttaagatattctgttttaggagatttagctg 25610785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 445 - 610
Target Start/End: Complemental strand, 25826866 - 25826704
Alignment:
Q  445 caattctagaaacagttttttggtcttaactttttaattaaattaggatgctttcaattcttttttaggatattaagatattctgttaatagggagattt 544  Q
    |||||||| ||||||||||||||| | || |||  |||||||||||||||||||||||||| ||||   ||||||||||||| |||||||||| ||||||    
T  25826866 caattctacaaacagttttttggtttcaaatttg-aattaaattaggatgctttcaattctgttttgttatattaagatattatgttaatagg-agattt 25826769  T
Q  545 agatgttatcgattctgctttcgtagattaaggatttaagatattctgttataggagatttagctg 610  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  25826768 agatgttatcgattctgtttttgtagattaaggatttaagat-ttctgttttaggagatttagctg 25826704  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 25826977 - 25826897
Alignment:
Q  363 ttctaagccactaacttcctaaaagaaagtttgaagtcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta 443  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25826977 ttctaagccactaacttccgaaaagaaagtttgaaatcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta 25826897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 25610512 - 25610591
Alignment:
Q  363 ttctaagccactaacttcctaaaagaaagtttgaagtcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  25610512 ttctaagccactaacttcctaaaagaaagtt-gaagtcttgtgtaaaaagatcggaatctcagctactgaagcgacgagta 25610591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 802 - 885
Target Start/End: Original strand, 25610843 - 25610926
Alignment:
Q  802 gcttctctttagaaaaagctctcagacgaacttatcatgaagctaacaccgaaaacttttctcctttcaagctaataaagagtt 885  Q
    |||||||||||||||||| | | ||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  25610843 gcttctctttagaaaaagttttgagaagaacttatcatgaaactaacacagaaaacttctctcctttcaagctaataaagagtt 25610926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 25609599 - 25609679
Alignment:
Q  133 atcttctgatgccacagagttgtttactatacctatgaaggttaaaagtttttcattagacttgttacaatatgagaagct 213  Q
    |||| |||||||||||||||| || | || ||| ||||||||||||||||||| |||||||||||||||| | ||||||||    
T  25609599 atctgctgatgccacagagttcttcagtaaaccaatgaaggttaaaagttttttattagacttgttacaaaacgagaagct 25609679  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 738 - 782
Target Start/End: Complemental strand, 25826557 - 25826513
Alignment:
Q  738 atgctaaaaggacttatcagagcttctcttttagatcaagcacta 782  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  25826557 atgctaaaaggacttatcaaagattctcttttagatcaagcacta 25826513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 833 - 876
Target Start/End: Complemental strand, 25826441 - 25826398
Alignment:
Q  833 ttatcatgaagctaacaccgaaaacttttctcctttcaagctaa 876  Q
    |||||||||||||||| | |||||||| ||||||||||||||||    
T  25826441 ttatcatgaagctaacgcagaaaacttctctcctttcaagctaa 25826398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 793
Target Start/End: Original strand, 25607821 - 25607862
Alignment:
Q  752 tatcagagcttctcttttagatcaagcactattgcttcttaa 793  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||    
T  25607821 tatcagagcttctcttttagaccaagcactaatgcttgttaa 25607862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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