View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_21 (Length: 360)
Name: NF16933_low_21
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 36519496 - 36519818
Alignment:
| Q |
18 |
aaggaatcattcaagtattctataacttctattcttaacatcaattttcttatcttatcaaaataataatgccaccaagcactacggtcaaaacgttcca |
117 |
Q |
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| T |
36519496 |
aaggaatcattcaagtattctataacttctattcttaacatcaattttcttatcttatcaaaataataatgccaccaagcactaaggtcaaaacgttcca |
36519595 |
T |
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| Q |
118 |
ttatataattaagtgaacttttaatcaaattaaagtatttgtaaaagttcaatctattatcactgttgaatcatgaagactgtttgattttattcaataa |
217 |
Q |
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| T |
36519596 |
ttatataattaagtgaacttttaatcaaa-----gtatttgtaaaagttcaatctattatcactgttgaatcatgaagactgtttgattttattcaataa |
36519690 |
T |
|
| Q |
218 |
cataaaagatgagtgttaaggatacatgtttaatacatatttttaaacacactcttaggttattggttaaaattcacatgtgtcttatcaaatttataaa |
317 |
Q |
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| T |
36519691 |
catgaaagatgagtgttaaggatacatgtttaatacatatttttaaatacactcttaggttattggttaaaattcacatgtgtcttatcaaatttatgaa |
36519790 |
T |
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| Q |
318 |
gatccacatgatttaacgagatctttgt |
345 |
Q |
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| T |
36519791 |
gatctacatgatttaacgagatctttgt |
36519818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 32286365 - 32286289
Alignment:
| Q |
254 |
atatttttaaacacactcttaggttattggttaaaattcacatgtgtcttatcaaatttataaagatccacatgattt |
331 |
Q |
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| T |
32286365 |
atatttttcaacacactctttt-ttattggttaaaattcacatggatccaaccaaatttatattgatccacatgattt |
32286289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 19110039 - 19110071
Alignment:
| Q |
277 |
ttattggttaaaattcacatgtgtcttatcaaa |
309 |
Q |
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| T |
19110039 |
ttattggttaaaatgcacatgtgtcttatcaaa |
19110071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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