View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_22 (Length: 353)
Name: NF16933_low_22
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 9283368 - 9283091
Alignment:
| Q |
13 |
tcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccaataatattacatttgagccggcagtgtgaggctcattgag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
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| T |
9283368 |
tcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccattaatattatatttgagccggcagtttgaggctcattgag |
9283269 |
T |
|
| Q |
113 |
aagttggcttgctggttcagcagtagaattaggcatcaccattgaaacaattgtgatcgaagcgtactgatcaaaattgatatcctcttaggaacatttg |
212 |
Q |
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||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||| |
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| T |
9283268 |
aagttggcttgctggttcaacaatagaattaggtatcaccattgaaactattgtgatcgaagcgtattggtcaaaattgatatgctcttaggaacatttg |
9283169 |
T |
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| Q |
213 |
ctaacttacattcctctgccaaataaaatactcactctaccacttgtgcacatagctcattaatatcttaccataata |
290 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9283168 |
ctaacttacattcctctgtcaaataaaatgctcactctaccacttgtgcacatagctcattaatatcttaccataata |
9283091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 22956333 - 22956259
Alignment:
| Q |
242 |
actcactctaccacttgtgcacatagctcattaatatcttaccataatataaggatcttttgcttccaaatactc |
316 |
Q |
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|||| |||||||||||||| ||||||||||||| ||||| |||| || ||||| || | ||||||||||||||| |
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| T |
22956333 |
actcgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactc |
22956259 |
T |
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