View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_low_23 (Length: 346)

Name: NF16933_low_23
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_low_23
NF16933_low_23
[»] chr8 (15 HSPs)
chr8 (25-337)||(14727553-14727861)
chr8 (16-106)||(29552811-29552901)
chr8 (23-142)||(15329839-15329958)
chr8 (23-142)||(15510208-15510327)
chr8 (25-172)||(27714299-27714446)
chr8 (23-142)||(28865933-28866052)
chr8 (16-172)||(26089184-26089343)
chr8 (16-177)||(30648837-30648998)
chr8 (16-178)||(28693137-28693300)
chr8 (270-331)||(26089059-26089120)
chr8 (33-113)||(26090238-26090318)
chr8 (261-337)||(28865754-28865830)
chr8 (29-104)||(24509349-24509424)
chr8 (270-337)||(30648690-30648757)
chr8 (75-142)||(31039544-31039611)
[»] chr1 (2 HSPs)
chr1 (28-191)||(26086400-26086563)
chr1 (260-334)||(26086619-26086693)
[»] chr3 (2 HSPs)
chr3 (26-177)||(4819862-4820013)
chr3 (260-336)||(4819716-4819792)
[»] chr7 (4 HSPs)
chr7 (25-171)||(17292616-17292762)
chr7 (27-158)||(6610865-6610999)
chr7 (260-329)||(6611070-6611139)
chr7 (260-329)||(17292838-17292907)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 25 - 337
Target Start/End: Complemental strand, 14727861 - 14727553
Alignment:
Q  25 gggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtacat 124  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||    
T  14727861 gggtggaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaaactgattggtacat 14727762  T
Q  125 ggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttctagtgcgagttatctcagttaccaatttattactc 224  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14727761 ggcagttgcaataagagtggcgactatcaaccaaatgttgcgttgctcttctgtcatgtcacttctagtgcgagttatctcagataccaatttattactc 14727662  T
Q  225 atagttttggttgtggccattaacctcaaactatgtatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatata 324  Q
    ||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727661 atagttttggttgtggccattaacctcaacc----tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatata 14727566  T
Q  325 ctcttcatctctg 337  Q
    |||||||||||||    
T  14727565 ctcttcatctctg 14727553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 29552901 - 29552811
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552901 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 29552811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 15329958 - 15329839
Alignment:
Q  23 tagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtac 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||| |||||||||||||||||||||||||| || ||||| ||||    
T  15329958 tagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactcagagttgattcgtac 15329859  T
Q  123 atggcagttgcaacaagagt 142  Q
    |||| |||||||| ||||||    
T  15329858 atggtagttgcaataagagt 15329839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 15510327 - 15510208
Alignment:
Q  23 tagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtac 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||| |||||||||||||||||||||||||| || ||||| ||||    
T  15510327 tagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactcagagttgattcgtac 15510228  T
Q  123 atggcagttgcaacaagagt 142  Q
    |||| |||||||| ||||||    
T  15510227 atggtagttgcaataagagt 15510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 27714446 - 27714299
Alignment:
Q  25 gggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtacat 124  Q
    ||||||| || |||||||| |||||||| ||||| | ||| |||||||||||||||||||||||||||||||||  |||| |||| |||||||| |||||    
T  27714446 gggtagacattgtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccaccaacgggagtcaatgctgattgatacat 27714347  T
Q  125 ggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 172  Q
    ||| |||||||||||||| || | ||||| |||| || ||||||||||    
T  27714346 ggctgttgcaacaagagtcgcaactatcatccaagtgttgcgttgctc 27714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 28866052 - 28865933
Alignment:
Q  23 tagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtac 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  || | ||| |||||||| ||||||||||||||||| || ||||| | ||    
T  28866052 tagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccaccagggggactcagagttgattcgaac 28865953  T
Q  123 atggcagttgcaacaagagt 142  Q
    |||| |||||||| ||||||    
T  28865952 atggtagttgcaataagagt 28865933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 26089343 - 26089184
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttg---tcactagcattaacctgataaactccaccagggggactcaaagc 112  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |   |||   ||||||||| |||||||||||| ||||| ||||||||||||  |    
T  26089343 catttcctggagtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctgataaattccactagggggactcaatcc 26089244  T
Q  113 tgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 172  Q
    |||||| || || ||||||||||||||||| || | |||||||||| || | ||||||||    
T  26089243 tgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctc 26089184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 30648998 - 30648837
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctga 115  Q
    |||||||| ||| |||||| ||| ||||||||||||||||||||   ||  |||||| |||| |||||||||||| ||||||||||||||||||  ||||    
T  30648998 catttcctggggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctga 30648899  T
Q  116 ttggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 177  Q
    ||| || |||||||| ||||||||||| || | |||||||||| || | |||||||| ||||    
T  30648898 ttgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctg 30648837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 28693137 - 28693300
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaac-ctgataaactccaccagggggactcaaagctg 114  Q
    ||||| || |||||||||||||||| || ||||||||||||||||||||  |||||| |||| |||  |||||||| ||||||||||||  ||| |||||    
T  28693137 catttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtcagagctg 28693236  T
Q  115 attggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgt 178  Q
    |||   |||||| |||||||| |||||| |||| ||| ||||||||| ||||||| || |||||    
T  28693237 attcaaacatggtagttgcaataagagtcgcgactattaaccaaatgttgcgttgatcctctgt 28693300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 26089120 - 26089059
Alignment:
Q  270 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttca 331  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||    
T  26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttca 26089059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 26090318 - 26090238
Alignment:
Q  33 atagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagct 113  Q
    |||||||||||| |||||||||||||| |||| ||||||| | |  ||| |||||||||||||||| ||||| ||||||||    
T  26090318 atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatggggagtcaaagct 26090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 28865830 - 28865754
Alignment:
Q  261 atgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 337  Q
    ||||||||||||||||||||| | |||||||| |||  |||||| |||| |||| |||||||||||||| |||||||    
T  28865830 atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctg 28865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 24509424 - 24509349
Alignment:
Q  29 agaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccaggggga 104  Q
    |||||||||||||| |||||||||| |||||||||||||||   ||||||||   ||||||| ||| |||||||||    
T  24509424 agaaatagtagaatcggaggaagtggtgttcaaatttttgttggtagcattagtttgataaaatccgccaggggga 24509349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 30648757 - 30648690
Alignment:
Q  270 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 337  Q
    |||||||  ||||| |||||||  |||| |||||| |||||||||||||||||||||||| |||||||    
T  30648757 tgtgggataatcagtgacttctgagctaggttttgttccaacacttaataatatactcttgatctctg 30648690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 31039544 - 31039611
Alignment:
Q  75 gcattaacctgataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 142  Q
    |||||| | ||||||||||||||||||||||| |  |||||||| ||| | |||||||||| ||||||    
T  31039544 gcattaccttgataaactccaccagggggactaagtgctgattgatacgtcgcagttgcaataagagt 31039611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 26086400 - 26086563
Alignment:
Q  28 tagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtacatggc 127  Q
    ||||||||||||||||||||||||||||||||||| | |||||||  ||| ||  | |||||||||||||||||||| ||| ||||||||  |||||||     
T  26086400 tagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccaccagggggagtcagagctgattcatacatggt 26086499  T
Q  128 agttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttcta 191  Q
    ||| |||| |||||  |||| ||| ||||||||| |||||||||| ||||||||||||||||||    
T  26086500 agtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgtcatgtcacttcta 26086563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 26086619 - 26086693
Alignment:
Q  260 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatct 334  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||||  | ||||||||||||||||| ||||    
T  26086619 tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatct 26086693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 4820013 - 4819862
Alignment:
Q  26 ggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtacatg 125  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||||||||||||||||||||||||||||||| || |||  ||  ||||||||  |  ||    
T  4820013 ggtagaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtg 4819914  T
Q  126 gcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 177  Q
    ||||||||||||||||| || | |||||||||| || |||||||||| ||||    
T  4819913 gcagttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctg 4819862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 4819792 - 4819716
Alignment:
Q  260 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctct 336  Q
    |||||||| ||||||| ||||  | |||||| | || | ||||||||||||||||| ||||||||||||| ||||||    
T  4819792 tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctct 4819716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 17292616 - 17292762
Alignment:
Q  25 gggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggactcaaagctgattggtacat 124  Q
    |||||||||| ||||||||| |||||||| |||||| ||| |||||||||| | ||||||||||||| ||||||  |||| | |  | |||||| ||  |    
T  17292616 gggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacaccaccaacgggagttagcgttgattgataggt 17292715  T
Q  125 ggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgct 171  Q
    ||| |||||||||||||| || |||||||||||| || |||||||||    
T  17292716 ggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct 17292762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 6610865 - 6610999
Alignment:
Q  27 gtagaaatagtagaattggaggaagtgatgttcaaatttttgtca---ctagcattaacctgataaactccaccagggggactcaaagctgattggtaca 123  Q
    ||||||||||||||||| |||||||||||||||| |   ||||||   | | || |||||||||||| ||||||||| ||||||||  ||||||| || |    
T  6610865 gtagaaatagtagaatttgaggaagtgatgttcacaccattgtcatcaccaacactaacctgataaattccaccaggaggactcaatcctgattgataga 6610964  T
Q  124 tggcagttgcaacaagagtggcgattatcaaccaa 158  Q
    ||||||||||||| ||||| || ||||||||||||    
T  6610965 tggcagttgcaacgagagtcgcaattatcaaccaa 6610999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 6611070 - 6611139
Alignment:
Q  260 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 329  Q
    |||||||| ||||||||  || || |||||||| |||| ||||||||||||| || ||||| ||||||||    
T  6611070 tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactctt 6611139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 17292838 - 17292907
Alignment:
Q  260 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 329  Q
    |||||||| |||||||||||||   |||||||| |||| |||||| |||| |||| ||||| ||||||||    
T  17292838 tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactctt 17292907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University