View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_26 (Length: 341)
Name: NF16933_low_26
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 9909560 - 9909876
Alignment:
| Q |
19 |
tgttataataatgacctggcccaattttggggttgctaaacaaatgtatacttttaatacagggcacacaagaaatatatacttcccatttgacaccaaa |
118 |
Q |
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| T |
9909560 |
tgttataataatgacccggcccgaatatgggtttgctaaacaaatgtatacttttaatacagggcacacaagaaatatatacttcccatttgacaccaaa |
9909659 |
T |
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| Q |
119 |
aaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaattagtgacttggaaccaatagagattgctgagatgattgaagaagagatat |
218 |
Q |
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| T |
9909660 |
aaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaattagtgacttggaaccaatagagattgctgagatgattgaagaagagatat |
9909759 |
T |
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| Q |
219 |
caactatagttccaacatggagggattgttgcagttctaagtatcaaagacaacatagttttatctatggtgaagaggatgatcatgatattagcaacca |
318 |
Q |
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| T |
9909760 |
caactatagttccaacatggagggattgttgcagttctaagtatcaaagacaacatagttttatctatggtgaagaggatgatcatgatattagtaacca |
9909859 |
T |
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| Q |
319 |
ccatcctttcttctcac |
335 |
Q |
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| T |
9909860 |
ccatcctttcttctcac |
9909876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 27091391 - 27091222
Alignment:
| Q |
70 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
169 |
Q |
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| T |
27091391 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27091292 |
T |
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| Q |
170 |
agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga |
239 |
Q |
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| T |
27091291 |
aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga |
27091222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 27186910 - 27187079
Alignment:
| Q |
70 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
169 |
Q |
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| T |
27186910 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27187009 |
T |
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| Q |
170 |
agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga |
239 |
Q |
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| T |
27187010 |
aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga |
27187079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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