View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_30 (Length: 295)
Name: NF16933_low_30
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 2542033 - 2542208
Alignment:
| Q |
102 |
tcacattcttaaataaaatttaaataccatatttagaaatttcaaacaacaactaaatatccatgttttagcctggtaaagagtccaacccaccaccaat |
201 |
Q |
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| T |
2542033 |
tcacattcttaaataaaatttaaataccatatttagaaatttcaaacaacaactaaatatccatgttctagtctggtaaagagtccaacccaccaccaat |
2542132 |
T |
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| Q |
202 |
tagggccccacttcaacataggtccaaatgatcaaaattttcttctcagatcctctacgactcctagaaactcataa |
278 |
Q |
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| T |
2542133 |
tagggccccacttcaacataggtcc-aatgatcaaaaatttcttctcagatcctctacgactcctagaaactcataa |
2542208 |
T |
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