View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_low_39 (Length: 239)

Name: NF16933_low_39
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_low_39
NF16933_low_39
[»] chr6 (1 HSPs)
chr6 (50-222)||(3017806-3017979)
[»] chr4 (2 HSPs)
chr4 (50-222)||(34344090-34344263)
chr4 (104-173)||(18913128-18913197)
[»] chr5 (2 HSPs)
chr5 (103-220)||(37278612-37278729)
chr5 (1-34)||(37278518-37278551)
[»] chr7 (2 HSPs)
chr7 (128-222)||(46420229-46420323)
chr7 (1-35)||(46420162-46420196)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 3017979 - 3017806
Alignment:
Q  50 attgaaacaaatacccaccacacacgttatctttccttcannnnnnnng-gattcattgatttggtcgaccatacaaatacacacattacaacattttat 148  Q
    ||||||||||||||||||||||||| ||||||||||||||          |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3017979 attgaaacaaatacccaccacacacattatctttccttcattttttttttgattcattgatttggtggaccatacaaatacacacattacaacattttat 3017880  T
Q  149 tttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017879 tttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttct 3017806  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 34344263 - 34344090
Alignment:
Q  50 attgaaacaaatacccaccacacacgttatctttccttcannnnnnnn-ggattcattgatttggtcgaccatacaaatacacacattacaacattttat 148  Q
    ||||||||||||| |||| |||||||||||||||||||||         ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  34344263 attgaaacaaatatccacaacacacgttatctttccttcatttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttat 34344164  T
Q  149 tttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34344163 tttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttct 34344090  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
Q  104 attgatttggtcgaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaag 173  Q
    ||||| ||||| |||| |||||||||||| || ||||| || | ||||| ||||||||||||||||||||    
T  18913128 attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag 18913197  T

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Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 37278612 - 37278729
Alignment:
Q  103 cattgatttggtcgaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa 202  Q
    |||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37278612 cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa 37278711  T
Q  203 agcttaccattcttcctt 220  Q
    ||||| ||||||||||||    
T  37278712 agcttgccattcttcctt 37278729  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37278518 - 37278551
Alignment:
Q  1 ccatttgtttactttttcactcctttattgctta 34  Q
    |||||||||||||||||||||| |||||||||||    
T  37278518 ccatttgtttactttttcactcttttattgctta 37278551  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 46420229 - 46420323
Alignment:
Q  128 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttct 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420229 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttct 46420323  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46420162 - 46420196
Alignment:
Q  1 ccatttgtttactttttcactcctttattgcttaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  46420162 ccatttgtttactttttcactcctttattgcttaa 46420196  T

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