View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_low_4 (Length: 541)

Name: NF16933_low_4
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_low_4
NF16933_low_4
[»] chr5 (6 HSPs)
chr5 (217-362)||(25609813-25609958)
chr5 (363-443)||(25826897-25826977)
chr5 (363-443)||(25610512-25610591)
chr5 (445-526)||(25610622-25610702)
chr5 (133-213)||(25609599-25609679)
chr5 (445-526)||(25826786-25826866)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 25609813 - 25609958
Alignment:
Q  217 atagatgattttacaagggtatgctggatgaaattaaaatttgaagttgctgatatttttgttaattcaaattttgggttgaaaatcagtgtgaatgcaa 316  Q
    ||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25609813 atagatgattttacaagggtatgctgattgaaattaacatttgacgttgctgatatttttgttaattcaaattttgggttgaaaatcagtgtgaatgcaa 25609912  T
Q  317 aattcaaatgttaagattagataatggaagtgattacacctcagaa 362  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25609913 aattcaaatgttaagattagataatggaagtgaatacacctcagaa 25609958  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 25826977 - 25826897
Alignment:
Q  363 ttctaagccactaacttcctaaaagaaagtttgaagtcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta 443  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25826977 ttctaagccactaacttccgaaaagaaagtttgaaatcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta 25826897  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 25610512 - 25610591
Alignment:
Q  363 ttctaagccactaacttcctaaaagaaagtttgaagtcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  25610512 ttctaagccactaacttcctaaaagaaagtt-gaagtcttgtgtaaaaagatcggaatctcagctactgaagcgacgagta 25610591  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 25610622 - 25610702
Alignment:
Q  445 caattctagaaacagttttttggtcttaactttttaattaaattaggatgctttcaattcttttttaggatattaagatatt 526  Q
    |||||||||||||||||||||||| |||| |||  |||||||||||||||||||||| | | |||||| |||||||||||||    
T  25610622 caattctagaaacagttttttggttttaaatttg-aattaaattaggatgctttcaaatatgttttagtatattaagatatt 25610702  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 25609599 - 25609679
Alignment:
Q  133 atcttctgatgccacagagttgtttactatacctatgaaggttaaaagtttttcattagacttgttacaatatgagaagct 213  Q
    |||| |||||||||||||||| || | || ||| ||||||||||||||||||| |||||||||||||||| | ||||||||    
T  25609599 atctgctgatgccacagagttcttcagtaaaccaatgaaggttaaaagttttttattagacttgttacaaaacgagaagct 25609679  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 526
Target Start/End: Complemental strand, 25826866 - 25826786
Alignment:
Q  445 caattctagaaacagttttttggtcttaactttttaattaaattaggatgctttcaattcttttttaggatattaagatatt 526  Q
    |||||||| ||||||||||||||| | || |||  |||||||||||||||||||||||||| ||||   |||||||||||||    
T  25826866 caattctacaaacagttttttggtttcaaatttg-aattaaattaggatgctttcaattctgttttgttatattaagatatt 25826786  T

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