View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16933_low_40 (Length: 237)
Name: NF16933_low_40
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_40 |
 | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 228084 - 228035
Alignment:
| Q |
184 |
acacctccccactcaccttcaccgacgacccacctcaccgtttcacctac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
228084 |
acacctccccactcaccttcaccgacgacccacctcaccgtttctcctac |
228035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 228251 - 228208
Alignment:
| Q |
17 |
gcttcaccgtaaactctttcaatctcaaccgtccacttcatctt |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228251 |
gcttcaccgtaaactctttcaatctcaaccgtccacttcatctt |
228208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University