View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16933_low_45 (Length: 217)
Name: NF16933_low_45
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 12026305 - 12026187
Alignment:
| Q |
97 |
aatatttgatatataacaaatgtatgtagagttggattgtcaggcgggtgcgggacagtttcaggctcaaaaccgcaaatgagtccaattcatacgtgag |
196 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12026305 |
aatatttgatatatcacaaatgtatgtagagttcgattgtcaggcgggtgcgggacagtttcaggctcaaaaccgcaaatgagtccaattcatacgtgag |
12026206 |
T |
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| Q |
197 |
aaacgaaacctcaattttg |
215 |
Q |
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||||||||||||||||||| |
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| T |
12026205 |
aaacgaaacctcaattttg |
12026187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 12026443 - 12026352
Alignment:
| Q |
1 |
ctaatttgttggcagctggcaattcagatctattgtgtttcagtttggatttattgtgtcagaagcttcctcctcatcctcattaacatcat |
92 |
Q |
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||||| ||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12026443 |
ctaatctgttggcggctggcagttcagatcttttgtgtttctgtttggatttattgtgtcagaagcttcctcctcatcctcattaacatcat |
12026352 |
T |
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