View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16933_low_5 (Length: 515)
Name: NF16933_low_5
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_5 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Complemental strand, 32804975 - 32804471
Alignment:
| Q |
17 |
acttctactacttcttcttcctcccacgttttctgcttcgctcgactgcttcatcgccgccgtgaaggaccataattctgccaatttcgacacagcgtgg |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32804975 |
acttctactacttcttcttcatcccacgttttctgcttccctcgactgcttcatcgccgccgcaaaggcccataattctgccaatttcgacacagcgtgg |
32804876 |
T |
|
| Q |
117 |
tggaggtaacgagccttgtcgaaacatcatgtcggacgaaagatgacaagcagagatgttttcatgaactacatgatctcttttggagcgtctctattgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32804875 |
tggaggtaacgagccttgtcgaaacatcatgtcggacgaaagatgacaagcagagatgttttcatgaactacatgatctcttttggagcgtctctattgt |
32804776 |
T |
|
| Q |
217 |
gttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcagcgcttaaggaagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32804775 |
gttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcagcgcttaaggaagc |
32804676 |
T |
|
| Q |
317 |
a-------tgagagggagaagaaagggaacagtgaaaggttcattttcattttaatctcggccattgattttttacatgcctcccacttgtcatacatct |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32804675 |
agaaaacgtgagagggagaagaaagggaacagtgaaaggttcatttacattttaatctcggccattgattttttacatgcctgccacttgtcatacatct |
32804576 |
T |
|
| Q |
410 |
aagaaagggattagtggactgttgtttatcttatttgtttcgtcaagtagtttaatgacttaaataatactccctccttcttataataattgagtattgt |
509 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
32804575 |
aagaaagggattattggactgttgtttatcttatttgtttggtcaagtag-ttaatgacttaaataatactccattcttcttataataattgagtattgt |
32804477 |
T |
|
| Q |
510 |
gttcat |
515 |
Q |
| |
|
|||||| |
|
|
| T |
32804476 |
gttcat |
32804471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 34153397 - 34153313
Alignment:
| Q |
192 |
atctcttttggagcgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacgg |
279 |
Q |
| |
|
|||||| |||||| |||||| |||| |||||||||||||||||| ||||||||| ||||||||||||| |||| || ||||||||| |
|
|
| T |
34153397 |
atctctcttggagtgtctctgttgttttttctttcagatgttttatgagtaata---agaacaaagacacggtggcggcggatcacgg |
34153313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 48167237 - 48167271
Alignment:
| Q |
251 |
aacaaagacacagtggtggtggatcacggcggagt |
285 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48167237 |
aacaaagacacggtggtggtggatcacggcggagt |
48167271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 7317745 - 7317846
Alignment:
| Q |
199 |
ttggagcgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcac |
298 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||| |||| || |||||||||| |||| |||| ||||| |
|
|
| T |
7317745 |
ttggagcgtctctgttgttttttctttcagatgttttatgagtaat---tagaacaaagacacggtggcggcggatcacggcagagtgattggtcttcat |
7317841 |
T |
|
| Q |
299 |
ggcag |
303 |
Q |
| |
|
||||| |
|
|
| T |
7317842 |
ggcag |
7317846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 17037599 - 17037491
Alignment:
| Q |
192 |
atctcttttggagcgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattga |
291 |
Q |
| |
|
|||||| |||||| |||||| ||| |||||||||||||||||| ||||||||| ||||||||||||| |||| || |||||||||| |||| |||| |
|
|
| T |
17037599 |
atctctcttggagtgtctctgatgttttttctttcagatgttttatgagtaata---agaacaaagacacggtggcggcggatcacggcagagtgattgg |
17037503 |
T |
|
| Q |
292 |
ccttcacggcag |
303 |
Q |
| |
|
||||| ||||| |
|
|
| T |
17037502 |
tcttcatggcag |
17037491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 46654403 - 46654437
Alignment:
| Q |
251 |
aacaaagacacagtggtggtggatcacggcggagt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
46654403 |
aacaaagacacagtggtggtggatcacggcagagt |
46654437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 1253239 - 1253273
Alignment:
| Q |
251 |
aacaaagacacagtggtggtggatcacggcggagt |
285 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
1253239 |
aacaaagacacagtggtggtggatgacggcggagt |
1253273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University