View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16933_low_7 (Length: 473)

Name: NF16933_low_7
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16933_low_7
NF16933_low_7
[»] chr8 (11 HSPs)
chr8 (150-473)||(14727804-14728127)
chr8 (14-113)||(14728126-14728225)
chr8 (388-473)||(15329899-15329984)
chr8 (388-473)||(15510268-15510353)
chr8 (403-472)||(28693133-28693202)
chr8 (388-473)||(28865993-28866078)
chr8 (342-468)||(29552840-29552966)
chr8 (381-451)||(26089299-26089369)
chr8 (25-77)||(15330291-15330343)
chr8 (25-77)||(15510660-15510712)
chr8 (25-77)||(28866387-28866439)
[»] chr1 (1 HSPs)
chr1 (303-471)||(26086281-26086452)
[»] chr7 (2 HSPs)
chr7 (387-472)||(17292587-17292672)
chr7 (407-451)||(6610854-6610898)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 150 - 473
Target Start/End: Complemental strand, 14728127 - 14727804
Alignment:
Q  150 catacaaaacgacaaaccaaataaaaataaaatccaagggattgtaacagtagcgacggcgacatctgtaggggatatctgaaacatagaaaccaggtaa 249  Q
    |||||||| ||||||||||||||||||||||| | ||||| ||  || | || ||  |  ||||||||||||||||||||||| |||| ||| |||||||    
T  14728127 catacaaaccgacaaaccaaataaaaataaaagcaaaggggttccaaaaataacggtgttgacatctgtaggggatatctgaagcatacaaatcaggtaa 14728028  T
Q  250 caaggcaaaaacgaactcatcagaatgtacacagtcagactggattgcgtacaacttgaggccataataactattgttataactgatgtgccaaaggaaa 349  Q
    |||||||||||||||||||||||| ||||||||   | || ||||||||||| ||||||||||||||||| |||||||||| |||||| |  ||||||||    
T  14728027 caaggcaaaaacgaactcatcagagtgtacacaaatataccggattgcgtactacttgaggccataataattattgttatagctgatgagagaaaggaaa 14727928  T
Q  350 ccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgtt 449  Q
     || ||| |||||||||||   | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  14727927 acagattgcaaattgaaaattgggagaaaagatatcctgacaagacagatcttccaacattttttggggtggaaatagtagaattggaggaagtgatgtt 14727828  T
Q  450 caaattattgtcaccagcactaat 473  Q
    ||||||||||||||||||||||||    
T  14727827 caaattattgtcaccagcactaat 14727804  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 14728225 - 14728126
Alignment:
Q  14 gatatattgttgtctttgaattcggtcagcagaactggtttgagttgtggttctaattagtgatttcaccatctacctctgacccacaaccttcgcatca 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14728225 gatatattgttgtctttgaattcggtccgcagaactggtttgagttgtggttctaattagtgatttcaccatctacctctgacccacaaacttcgcatca 14728126  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 15329984 - 15329899
Alignment:
Q  388 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaat 473  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  15329984 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaat 15329899  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 15510353 - 15510268
Alignment:
Q  388 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaat 473  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  15510353 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaat 15510268  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 28693133 - 28693202
Alignment:
Q  403 ccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaa 472  Q
    ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||    
T  28693133 ccaacatttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaa 28693202  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 28866078 - 28865993
Alignment:
Q  388 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaat 473  Q
    |||||||||||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||| ||||||    
T  28866078 gacaagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaat 28865993  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 29552966 - 29552840
Alignment:
Q  342 aaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaa 441  Q
    ||||||||| |||||||||| |||||||   ||||||  |  | |||||| ||| ||| ||||| ||||| || |||| |||||||||||||  ||||||    
T  29552966 aaaggaaactatattccaaaatgaaaaccgaaagaaatcaacttctgacatgaccgattttccagcatttcctagggtagaaatagtagaattggaggaa 29552867  T
Q  442 gtgatgttcaaattattgtcaccagca 468  Q
    |||||||||||||| ||||||| ||||    
T  29552866 gtgatgttcaaatttttgtcactagca 29552840  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 26089369 - 26089299
Alignment:
Q  381 atatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttca 451  Q
    |||||||||||| |||||| | ||| ||||| |||| || |||||||||||||  ||||||||||||||||    
T  26089369 atatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtgatgttca 26089299  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 15330343 - 15330291
Alignment:
Q  25 gtctttgaattcggtcagcagaactggtttgagttgtggttctaattagtgat 77  Q
    |||||||||||||| |||||| ||||||||||||||  | |||||||||||||    
T  15330343 gtctttgaattcggccagcagtactggtttgagttgcagatctaattagtgat 15330291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 15510712 - 15510660
Alignment:
Q  25 gtctttgaattcggtcagcagaactggtttgagttgtggttctaattagtgat 77  Q
    |||||||||||||| |||||| ||||||||||||||  | |||||||||||||    
T  15510712 gtctttgaattcggccagcagtactggtttgagttgcagatctaattagtgat 15510660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 28866439 - 28866387
Alignment:
Q  25 gtctttgaattcggtcagcagaactggtttgagttgtggttctaattagtgat 77  Q
    |||||||||||||| |||||| | | |||||||||| || |||||||||||||    
T  28866439 gtctttgaattcggccagcagtagttgtttgagttgcggatctaattagtgat 28866387  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 471
Target Start/End: Original strand, 26086281 - 26086452
Alignment:
Q  303 acttgaggccataataactattgttataactgatgtgccaaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatctt 402  Q
    |||||||| |||||||| ||||||| ||| ||||||   |||||||| ||||||  ||| ||||||||   |||||| |  | |||||||||||||| |     
T  26086281 acttgaggtcataataattattgttgtaattgatgtataaaaggaaagcatatttgaaactgaaaacagacagaaaatagcttctgacaagacagatttc 26086380  T
Q  403 ccaacattttctggggtg---gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcacta 471  Q
    ||||||||| || ||||    |||||||||||||  |||||||||||||||||| |||||||||| ||||||    
T  26086381 ccaacatttccttgggtactagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcacta 26086452  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 17292587 - 17292672
Alignment:
Q  387 tgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaa 472  Q
    ||||||||| ||| | |||||||||| |||||| ||||| |||||||   |||||||| |||||| ||||||||||| || |||||    
T  17292587 tgacaagaccgatttcccaacattttttggggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaa 17292672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 6610854 - 6610898
Alignment:
Q  407 cattttctggggtggaaatagtagaatatgaggaagtgatgttca 451  Q
    |||||||||| || ||||||||||||| |||||||||||||||||    
T  6610854 cattttctggagtagaaatagtagaatttgaggaagtgatgttca 6610898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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