View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16933_low_9 (Length: 427)
Name: NF16933_low_9
Description: NF16933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16933_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 30048848 - 30049271
Alignment:
| Q |
1 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048848 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
30048947 |
T |
|
| Q |
101 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048948 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
30049047 |
T |
|
| Q |
201 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049048 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
30049147 |
T |
|
| Q |
301 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049148 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
30049247 |
T |
|
| Q |
401 |
gatctgaatcatgtacaagaggaa |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30049248 |
gatctgaatcatgtacaagaggaa |
30049271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 7161205 - 7161549
Alignment:
| Q |
1 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
7161205 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggttcatgcattca |
7161304 |
T |
|
| Q |
101 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161305 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
7161404 |
T |
|
| Q |
201 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
300 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161405 |
aa----------------attgggctggatcggttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
7161488 |
T |
|
| Q |
301 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagct |
361 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161489 |
caaaaaacaagacgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagct |
7161549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 7162157 - 7162224
Alignment:
| Q |
357 |
cagctgcatcaaatcaagctatttggatcaaaaaggtattgagtgatctgaatcatgtacaagaggaa |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7162157 |
cagctgcatcaaatcaagctatttggatcaaaatggtattgagtgatctgaatcatatacaagaggaa |
7162224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 18014622 - 18014651
Alignment:
| Q |
211 |
tgatagtgattgggctggatctattgatga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18014622 |
tgatagtgattgggctggatctattgatga |
18014651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 197167 - 196744
Alignment:
| Q |
1 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197167 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
197068 |
T |
|
| Q |
101 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197067 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
196968 |
T |
|
| Q |
201 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196967 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
196868 |
T |
|
| Q |
301 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196867 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
196768 |
T |
|
| Q |
401 |
gatctgaatcatgtacaagaggaa |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
196767 |
gatctgaatcatgtacaagaggaa |
196744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 3945102 - 3945525
Alignment:
| Q |
1 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945102 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
3945201 |
T |
|
| Q |
101 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3945202 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatagtaagattg |
3945301 |
T |
|
| Q |
201 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945302 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
3945401 |
T |
|
| Q |
301 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945402 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
3945501 |
T |
|
| Q |
401 |
gatctgaatcatgtacaagaggaa |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3945502 |
gatctgaatcatgtacaagaggaa |
3945525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 39950328 - 39949905
Alignment:
| Q |
1 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950328 |
tactcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
39950229 |
T |
|
| Q |
101 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950228 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
39950129 |
T |
|
| Q |
201 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950128 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
39950029 |
T |
|
| Q |
301 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950028 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagc |
39949929 |
T |
|
| Q |
401 |
gatctgaatcatgtacaagaggaa |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39949928 |
gatctgaatcatgtacaagaggaa |
39949905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 22364730 - 22365153
Alignment:
| Q |
1 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22364730 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggttcatgcattca |
22364829 |
T |
|
| Q |
101 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364830 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
22364929 |
T |
|
| Q |
201 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364930 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
22365029 |
T |
|
| Q |
301 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22365030 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggataaaaaaggtattgagt |
22365129 |
T |
|
| Q |
401 |
gatctgaatcatgtacaagaggaa |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
22365130 |
gatctgaatcatgtacaagaggaa |
22365153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 382
Target Start/End: Original strand, 22134942 - 22135112
Alignment:
| Q |
212 |
gatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattccaaaaaacaag |
311 |
Q |
| |
|
|||||||||||||||||| | |||||||||| || ||||| |||||||||||||||| |||| | |||| | || || ||||| || || ||||| | |
|
|
| T |
22134942 |
gatagtgattgggctggaagtgttgatgattccaagagcacttctggttatgttttttcatttggcaatggtattttctcttggaagtcaaagaaacagg |
22135041 |
T |
|
| Q |
312 |
atgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttgg |
382 |
Q |
| |
|
| | || |||||||| | || || ||||| |||||| | || |||||||| |||| |||||||||||| |
|
|
| T |
22135042 |
agattgtagctcaatctacggcagaggctgaatatatttcagcagcagctgctgcaaaccaagctatttgg |
22135112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 22134777 - 22134833
Alignment:
| Q |
50 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
106 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
22134777 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
22134833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 17387577 - 17387521
Alignment:
| Q |
50 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
106 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
17387577 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
17387521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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