View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16934_high_1 (Length: 328)
Name: NF16934_high_1
Description: NF16934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16934_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 10487207 - 10487505
Alignment:
| Q |
13 |
aatatccactacatagatccgttcctgctgatgggggaggaacaccatcataccattttgtttatgctttaacatgggaattccgaatgcgcatacctat |
112 |
Q |
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| T |
10487207 |
aatatacactacatagatccatccctgctgatgggggaggaacaccatcataccattttgttgatgctttaccatgggaatctcgaatgcacatacctat |
10487306 |
T |
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| Q |
113 |
accgaagctcctttgctcctcaacaatggccacatcaacgttgcattttagatagtccgcattaggtggctgcttccgtgtctcttgttgttgttggcgc |
212 |
Q |
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| T |
10487307 |
accgaagctcctttgctcctcaaaaatggacgcatcaacgttgcattttagatagtccgcattaggtggctgcttccgtgtctcttgttgttgttggcgc |
10487406 |
T |
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| Q |
213 |
tgtgcaggcgctgctactgacattacatcagcatgagctgttgatgtaccatttgatgtctgccattgagcaagtacttcactcgctagctgaacaacc |
311 |
Q |
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| T |
10487407 |
tgtgcaggcgctgctactgacattacatcagcatgaactgttgatgtaccatttgatgtctgccattgagcaagtacttcactcgctagctgaacaacc |
10487505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 307
Target Start/End: Original strand, 19023561 - 19023837
Alignment:
| Q |
40 |
ctgatgggggaggaacaccatcataccattttgtttatgctttaa---------catgggaattccgaatgcgcatacctataccgaagctcctttgctc |
130 |
Q |
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| T |
19023561 |
ctgatgggggagcaacaccatcatactattttgttgatgcttttataaaattaccatgggagtcgcgaatgcacatacctataccaaagctcctttgctc |
19023660 |
T |
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| Q |
131 |
ctcaacaatggccacatcaacgttgcattttagatagtccgcattaggtggctgcttccgtgtctcttgttgttgttggcgctgtgcaggcgctgctact |
230 |
Q |
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| T |
19023661 |
ctcaaaaatggctgcatcaacgttacattttagatggttcgtgtcaggtggctgccaccgtgtttgttgttgctgcagacgctgtgcaggtgctgctgct |
19023760 |
T |
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| Q |
231 |
gacattacatcagcatgagctgttgatgtaccatttgatgtctgccattgagcaagtacttcactcgctagctgaac |
307 |
Q |
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| T |
19023761 |
gccattacatcagcagaggctgctgatgtaccatttgctgcttgccattgagcaagtacttccctcgctagctgaac |
19023837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 29542000 - 29541850
Alignment:
| Q |
95 |
ccgaatgcgcatacctataccgaagctcctttgctcctcaacaatggccacatcaacgttgcattttagatagtccgcattaggtggctgcttccgtgtc |
194 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| | |||||||||| |||| | |
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| T |
29542000 |
ccgaatgcatatacctataccaaagctcctttgctcctcaaaaatggctgcatcaacgttacattttagatagtccgcgtcaggtggctgccaccgtatt |
29541901 |
T |
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| Q |
195 |
tcttgttgttgttggcgctgtgcaggcgctgctactgacattacatcagca |
245 |
Q |
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| T |
29541900 |
tgttgttgctgcagacgctgtgcaggtgctgctgctgccattacatcagca |
29541850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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