View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16934_high_4 (Length: 231)
Name: NF16934_high_4
Description: NF16934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16934_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 21195716 - 21195517
Alignment:
| Q |
18 |
cttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattgg |
117 |
Q |
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| T |
21195716 |
cttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattgg |
21195617 |
T |
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| Q |
118 |
acattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195616 |
acattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
21195517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 27251465 - 27251266
Alignment:
| Q |
18 |
cttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251465 |
cttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattgg |
27251366 |
T |
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| Q |
118 |
acattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27251365 |
acattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctatcaataccatgttctccatccagcaagatctctg |
27251266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 27268251 - 27268052
Alignment:
| Q |
18 |
cttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattgg |
117 |
Q |
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||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27268251 |
cttgaggatatagtcagcaactgttgcagaagagaccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaatgccctcaaattgg |
27268152 |
T |
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| Q |
118 |
acattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
27268151 |
acattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcaaaagttctgtcaatactatgttctccatcaagcaagatctctg |
27268052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 49364671 - 49364732
Alignment:
| Q |
66 |
ctcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacattgttct |
127 |
Q |
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|||||| || || |||||||||||||||||||| | ||| |||||||| |||||||||||| |
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| T |
49364671 |
ctcagcaccaggtgtaaccatgctaggcttgagcaaaattccctcaaaaaggacattgttct |
49364732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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