View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16934_low_1 (Length: 427)
Name: NF16934_low_1
Description: NF16934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16934_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 4348664 - 4349074
Alignment:
| Q |
6 |
actgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcctcatacttctagagtcctccatctttctcaggtatgcttcaagtcataa |
105 |
Q |
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| T |
4348664 |
actgtgtttgtggcaatatccatctatgactaaagttggtggcttggatccccatacttctagagtcctccatctttctcaggtatgcttcaagtcataa |
4348763 |
T |
|
| Q |
106 |
ttacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgtgaatttttaaagcatgtaataatgtgagtacaatcattcattggcaaga |
205 |
Q |
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| T |
4348764 |
ttacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgtgaatttttaaagcatgtaataatgtgagtacaatcattcattggcaaga |
4348863 |
T |
|
| Q |
206 |
gcatctaatatagtttcttgggattgttttcaacaagtgacatcaacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaa |
305 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348864 |
gcatctaatatagttgcttgggattgttttcaacaagtgacatcaacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaa |
4348963 |
T |
|
| Q |
306 |
gggggttatttctttcaagttatacactaatgctcttatgtcttgcagagttcagatggtttaactgtggtttcatctgggggagatgagacacttcgct |
405 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4348964 |
ggggattatttctttcaagttatacactaatgctcttatgtcttgcagagttcagatggtttaactgtggtttcatctgggggagatgagacgcttcgct |
4349063 |
T |
|
| Q |
406 |
tttgggatatt |
416 |
Q |
| |
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| T |
4349064 |
tttgggatatt |
4349074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 416
Target Start/End: Complemental strand, 25745381 - 25744981
Alignment:
| Q |
6 |
actgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcctcatacttctagagtcctccatctttctcaggtatgcttcaagtcataa |
105 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25745381 |
actgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtcctccatctttctcaggtatgcttcaagtcatca |
25745282 |
T |
|
| Q |
106 |
ttacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgtgaatttttaaagcatgtaataatgtgagtacaatcattcattggcaaga |
205 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |
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| T |
25745281 |
ttacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtgaatttttatagcatgtaagaatgcgagtacagtcattcattggcaaga |
25745182 |
T |
|
| Q |
206 |
gcatctaatatagtttcttgggattgttttcaacaagtgacatcaacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaa |
305 |
Q |
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||||||||| ||| | ||| |||||||||| | || |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
25745181 |
gcatctaatttagctgcttcagattgttttc--------atataaacttcaactttgttaaaacatataaacatgaatcaaaccacttaaactttatcaa |
25745090 |
T |
|
| Q |
306 |
gggggttatttctttcaagttatacactaatgctcttatgtcttgcagagttcagatggtttaactgtggtttcatctgggggagatgagacacttcgct |
405 |
Q |
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|| | ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| | || ||||||||||| ||||||| |
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| T |
25745089 |
ggtgattatttcattcaagt--tacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgct |
25744992 |
T |
|
| Q |
406 |
tttgggatatt |
416 |
Q |
| |
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||||||||||| |
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| T |
25744991 |
tttgggatatt |
25744981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 18928595 - 18928523
Alignment:
| Q |
26 |
catctatgactaaagttggtggcttggatcctcatacttct---agagtcctccatctttctcaggtatgctt |
95 |
Q |
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|||||||||| ||| |||| |||||| | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18928595 |
catctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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