View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16934_low_3 (Length: 296)
Name: NF16934_low_3
Description: NF16934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16934_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 6206666 - 6206933
Alignment:
| Q |
15 |
aaattcacagtgaaaccaaacattcaaatagtaatagtcgtttacct-ttttccagtgtaccatggacgccatgctgtatctacaggtagttttaaggaa |
113 |
Q |
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| T |
6206666 |
aaattcacaatgaaaccaaacattcacatagtaatagtcgtttacctcttttccagtgtaccatggacgccatgctgtatgcacaggcagttttaaggaa |
6206765 |
T |
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| Q |
114 |
tttattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattattaaattaaataacaaaacaagtaaataattttatacttac |
213 |
Q |
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| T |
6206766 |
tttattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattattaaattaaataacaaaacaagtaaataattttatacttat |
6206865 |
T |
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| Q |
214 |
acataaagcattgataatattgtcattgatgtgacagaccaatttataaagtttatcatacctgtatatccctatg |
289 |
Q |
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| T |
6206866 |
acataaagcattgataatattgtca--------acagaccaatttataaagtttatcatacctgtatatccatatg |
6206933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 6176858 - 6177121
Alignment:
| Q |
17 |
attcacagtgaaaccaaacattcaaatagtaatagtcgtttacct-ttttccagtgtaccatggacgccatgctgtatctacaggtagttttaaggaatt |
115 |
Q |
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| T |
6176858 |
attcacagtgataccaaacattgacttagtaatggtcctttacctcttttccagtgtaccatggacgccatgctgtatgcacaggcagttttaaggaatt |
6176957 |
T |
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| Q |
116 |
tattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattattaaattaaataacaaaacaagtaaataattttatacttacac |
215 |
Q |
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| T |
6176958 |
tattgaatactttgttgaggttataggaacacgtccatctatatctccactgcattatt--attagataacaaaaca---aagtaat------gttagac |
6177046 |
T |
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| Q |
216 |
ataaagcattgataatat-tgtcattgatgtgacagaccaatttataaagtttatcatacctgtatatccctatg |
289 |
Q |
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| T |
6177047 |
ataaagcattgataatatctatttttgatgtgacagatcaatttataaagtatatcatacctgtatatccatatg |
6177121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 6214410 - 6214523
Alignment:
| Q |
62 |
ttttccagtgtaccatggacgccatgctgtatctacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccatctaaatca |
161 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |
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| T |
6214410 |
ttttccagtgtaccatggacgccatgctgtacgtacatgtagttttaaggaatttattgaatactttgttgagattatgggaacacgtccatctatatct |
6214509 |
T |
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| Q |
162 |
ccactgcattatta |
175 |
Q |
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|||||||||||||| |
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| T |
6214510 |
ccactgcattatta |
6214523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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