View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16935_high_1 (Length: 540)
Name: NF16935_high_1
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 35306948 - 35307468
Alignment:
| Q |
19 |
caaattaccaaaaatgaaaaagcaacaataatactacaattgccgatgtgtccaagatctagtcaacctttatgaccaagacctc---------caa--- |
106 |
Q |
| |
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||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
35306948 |
caaattatcaaaaatgaaaaagtaacaacaatactacaattgccaatgtgtccaagatctagtcaacctttatgacttagaccttgtaattaatcaatcc |
35307047 |
T |
|
| Q |
107 |
cacattaaatattaatttaattgcttataagccctccaatattcaagatcaattcacaagcctacaattctttctaatctccccattagtccctgttaga |
206 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
35307048 |
cacaa-aaatctttatttaattgcttataagccctccaat--tcaagatcaattcacaagcctgcaattctttctaatctccccattagtcccagttaga |
35307144 |
T |
|
| Q |
207 |
ggattaattttactcagtttcaccatagcaacagcaaagtctcttctaaaagtagcaccattgatactataactcctaaccaaattatcttgagacccat |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35307145 |
ggactaattttactcagtttcaccatagcaacggcaaagtctctagaaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccat |
35307244 |
T |
|
| Q |
307 |
tattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagagg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
35307245 |
tattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtgg |
35307344 |
T |
|
| Q |
407 |
tgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaa |
506 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307345 |
tgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaa |
35307444 |
T |
|
| Q |
507 |
aattggcactctccttggcctatg |
530 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
35307445 |
aattggcactctccttggcctatg |
35307468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 28 - 530
Target Start/End: Original strand, 35321958 - 35322469
Alignment:
| Q |
28 |
aaaaatgaaaaagcaacaataatactacaattgccgatgtgtccaagatctagtcaacctttatgaccaagacctc---------caa---cacattaaa |
115 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||| |||| ||| |
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| T |
35321958 |
aaaaatgtaagagcaacaacaatactacaattgccaatgtgttcaagatctagtcaacctttatgacttagaccttataattaatcaatcccacaa-aaa |
35322056 |
T |
|
| Q |
116 |
tattaatttaattgcttataagccctccaatattcaagatcaattcacaagcctacaattctttctaatctccccattagtccctgttagaggattaatt |
215 |
Q |
| |
|
| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35322057 |
tctttattcaattgcttataagccctccaat--tcaagatcaattcacaagcctacaattctttctaatctccccattagtcccagttagaggattaatt |
35322154 |
T |
|
| Q |
216 |
ttactcagtttcaccatagcaacagcaaagtctcttctaaaagtagcaccattgatactataactcctaaccaaattatcttgagacccattattgaaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35322155 |
ttactcagtttcaccatagcaacagcaaagtctcttctaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccattattgaaaa |
35322254 |
T |
|
| Q |
316 |
gagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaatt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
35322255 |
gagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaatt |
35322354 |
T |
|
| Q |
416 |
agtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcac |
515 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35322355 |
ggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcac |
35322454 |
T |
|
| Q |
516 |
tctccttggcctatg |
530 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35322455 |
tctccttggcctatg |
35322469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 121 - 530
Target Start/End: Original strand, 35311402 - 35311814
Alignment:
| Q |
121 |
atttaattgcttataagccctccaatattcaagatcaattcacaagcctacaattctttctaatctccccattagtccctgttagaggattaattttact |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||| | |||||||| |
|
|
| T |
35311402 |
atttaattgcttataagccctccaatattcaatatcaattcacaagcctacaattctttctgatctccccattagtcccagtgagaggactgattttact |
35311501 |
T |
|
| Q |
221 |
cagtttcaccatagcaacagcaaagtctcttctaaaagtagcaccattgatactataactcctaaccaaattatcttgagacccattattgaaaagagct |
320 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35311502 |
cagtttcaccatagcagcagcaaagtctgtagaaaaagcagcctcattggtactataactcctaaccaaattatcttgagacccattattgaaaaggact |
35311601 |
T |
|
| Q |
321 |
tgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgt |
420 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
35311602 |
tgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgt |
35311701 |
T |
|
| Q |
421 |
ca---ccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactc |
517 |
Q |
| |
|
|| ||| ||||| || ||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||| |
|
|
| T |
35311702 |
cattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactc |
35311801 |
T |
|
| Q |
518 |
tccttggcctatg |
530 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35311802 |
tccttggcctatg |
35311814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 159 - 530
Target Start/End: Original strand, 35289296 - 35289670
Alignment:
| Q |
159 |
ttcacaagcctacaattctttctaatctccccattagtccctgttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttctaaaag |
258 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||| | |||||||||||| |||||| |
|
|
| T |
35289296 |
ttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatcttcaccatagcagctgcaaagtctcttttaaaag |
35289395 |
T |
|
| Q |
259 |
tagcaccattgatactataactcctaaccaaattatcttgagacccatta---ttgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaag |
355 |
Q |
| |
|
| | ||| |||||||| ||||||||||| | ||||||| ||| | ||||||||||||||||||||||| | ||| ||||| | |||||||| |
|
|
| T |
35289396 |
caatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaag |
35289495 |
T |
|
| Q |
356 |
gtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaag |
455 |
Q |
| |
|
|| ||||||||||||||||||||| | ||||| || || |||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||| |
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|
| T |
35289496 |
gtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtaggacaatttgattttcttaag |
35289595 |
T |
|
| Q |
456 |
gttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
530 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| || ||| |||| |||||| |
|
|
| T |
35289596 |
gttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaattgacattctgcttgacctatg |
35289670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 157 - 530
Target Start/End: Original strand, 35279949 - 35280325
Alignment:
| Q |
157 |
aattcacaagcctacaattctttctaatctccccattagtccctgttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttctaaa |
256 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||||| |||||| ||||| | |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
35279949 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagcaaaagcaaagtctcttctaaa |
35280048 |
T |
|
| Q |
257 |
agtagcaccattgatactataactcctaaccaaattatcttgagacccatta---ttgaaaagagcttgatcagaatggaaaagacctttgcttgcaaca |
353 |
Q |
| |
|
|| | |||||| ||||||||| |||||||||| | || |||| ||| | |||||||| ||||||||||||| | ||| ||||| | ||||| |
|
|
| T |
35280049 |
agcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaact |
35280148 |
T |
|
| Q |
354 |
aggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttcctta |
453 |
Q |
| |
|
|| | |||| ||||||||||||||| | |||| || || ||||||||| || ||||| |||||||| |||||||||||||| |||| ||| |||| |
|
|
| T |
35280149 |
agatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccagaaagaggacagtttgcttttctta |
35280248 |
T |
|
| Q |
454 |
aggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
530 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||| |
|
|
| T |
35280249 |
aggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatg |
35280325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 154 - 517
Target Start/End: Original strand, 35275179 - 35275545
Alignment:
| Q |
154 |
atcaattcacaagcctacaattctttctaatctccccattagtccctgttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttct |
253 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||| ||||||||||| || |||||| |||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
35275179 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
35275278 |
T |
|
| Q |
254 |
aaaagtagcaccattgatactataactcctaaccaaattatcttgagacccatta---ttgaaaagagcttgatcagaatggaaaagacctttgcttgca |
350 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||| | |||||| ||| | ||||||||| ||||||||||||| | ||||||||| | ||| |
|
|
| T |
35275279 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
35275378 |
T |
|
| Q |
351 |
acaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttcc |
450 |
Q |
| |
|
| ||||| ||||| |||||||||||||| | |||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||| ||| | |
|
|
| T |
35275379 |
ataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttc |
35275478 |
T |
|
| Q |
451 |
ttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactc |
517 |
Q |
| |
|
||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
35275479 |
ttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactc |
35275545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 35289215 - 35289270
Alignment:
| Q |
39 |
agcaacaataatactacaattgccgatgtgtccaagatctagtcaacctttatgac |
94 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35289215 |
agcatcaacaatactacaattgccaatgtgtccaagatctagtcaacctttatgac |
35289270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 35275019 - 35275056
Alignment:
| Q |
64 |
atgtgtccaagatctagtcaacctttatgaccaagacc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35275019 |
atgtgtccaagatctagtcaacctttatgacctagacc |
35275056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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