View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_high_16 (Length: 246)
Name: NF16935_high_16
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 42117579 - 42117417
Alignment:
| Q |
84 |
tttgttttgttcatgttatgtaaaagaggcttatatagtgaagaagagacaaggtctaaagcattgaagactataattgatgtagaggagatcgacctaa |
183 |
Q |
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| T |
42117579 |
tttgttttgttcatgttatgtaaaagaggcttatatagtgaagaagagacaaggtctaaagcattgaagactataattgatgtagaggagatcgacctaa |
42117480 |
T |
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| Q |
184 |
tcatatatggcttggtttaaagagtttgcagctttgttggttcacctttgaagatgagaggtt |
246 |
Q |
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| T |
42117479 |
tcatatatggcttggtttaaagagtttgcagctttgttggttcacctttgaagatgagaggtt |
42117417 |
T |
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