View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_high_4 (Length: 490)
Name: NF16935_high_4
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_high_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 30054521 - 30055010
Alignment:
| Q |
18 |
agacagtcaatgatttgatattagaaaactagtagtagccagttgagtaggactgcagattcatcttccaacgggcgatt---gaatccgatgtctgcat |
114 |
Q |
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| T |
30054521 |
agacagtcaatgatttgatattagaaaact-gtagtagccagttgagtaggactgcagattcgtcttccaaggggcgattaatgaatccgatgtctgcat |
30054619 |
T |
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| Q |
115 |
ccttgtaaacgtgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatgtt |
214 |
Q |
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| T |
30054620 |
ccatgtaaacatgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatgtt |
30054719 |
T |
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| Q |
215 |
gcacatcaaactagcat---------atccatac------atagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcctccacaagt |
299 |
Q |
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| T |
30054720 |
gccaatcaaactagcattggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcctccacaagt |
30054819 |
T |
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| Q |
300 |
ataaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagagtt |
399 |
Q |
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| T |
30054820 |
ctaaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagagtt |
30054919 |
T |
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| Q |
400 |
ggggaagtatactttgttaaatactccaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatgga |
490 |
Q |
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| T |
30054920 |
ggggaagtatactttgttaaatactacaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatgga |
30055010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 8400207 - 8400261
Alignment:
| Q |
436 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatgga |
490 |
Q |
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| T |
8400207 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatgga |
8400261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 5368802 - 5368753
Alignment:
| Q |
437 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaaga |
486 |
Q |
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| T |
5368802 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaaga |
5368753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 5374559 - 5374510
Alignment:
| Q |
437 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaaga |
486 |
Q |
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| T |
5374559 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaaga |
5374510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 5367997 - 5367951
Alignment:
| Q |
436 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc |
482 |
Q |
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| T |
5367997 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagc |
5367951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 5362781 - 5362735
Alignment:
| Q |
436 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc |
482 |
Q |
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| T |
5362781 |
gtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagc |
5362735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 45906383 - 45906437
Alignment:
| Q |
236 |
atacatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcc |
290 |
Q |
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| T |
45906383 |
atacatagttaaattgacaagtgttccacttgatatgcaaagggtttttgcatcc |
45906437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 30597955 - 30597999
Alignment:
| Q |
444 |
aaaggtcaagagaagttaaagtttgagatgaaaataagcaagatg |
488 |
Q |
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| T |
30597955 |
aaaggtcaagagaggttaaagtgtgacatgaaaaaaagcaagatg |
30597999 |
T |
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