View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_high_6 (Length: 467)
Name: NF16935_high_6
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 12337797 - 12338248
Alignment:
| Q |
1 |
gaaaagaattgtatacat---gcctcattttagaggaacatatgatgttcaaactcattttttgattttcttagcttgatgtaatgatcctccctaatgt |
97 |
Q |
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| T |
12337797 |
gaaaagaattgtatacataatgcctcattttagaggaacgtatgatgttcaaactcattttttgattttcttatcttgatgtaatgatcctccctaatgt |
12337896 |
T |
|
| Q |
98 |
ttaaggctccacgaaaattccaccagttgtatcagagtgttggttcaacttgatgggg-agaagaagcgatatttgttggatcaaatgatgtggagagtt |
196 |
Q |
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| T |
12337897 |
ttaaggctccacgaaaattccaccaattgtatcagagtgttggttcaacttgacgggggagaagaagcgatatttgttggatcaaatgatgtggagagtt |
12337996 |
T |
|
| Q |
197 |
tcacatttgaatgaaagaatgttgataagtcaagtacgaattaaaagttttacgttgcatgaaagagtatattttgaccaacctataaattaaaagacca |
296 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12337997 |
tcacatttgaatgaaagaatgttgatatgtcaagtacgaattaaaagttttatgttgcatgaaagagtatattttgaccaacctataaattaaaagacca |
12338096 |
T |
|
| Q |
297 |
atatacttaatgttttaagattttaagtaaatatgtggtatcaaaactcacttgtaattgttctaagttcaatgtattgattcactcgtatgttttaaga |
396 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12338097 |
atatacttaatgttttaagattttaagtaaatacgtggtatcaaaactcacttgtaattgttctaagttcaatgtaatgattcactcgtatgttttaaga |
12338196 |
T |
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| Q |
397 |
ctccccc-aagtctcatcacaagtgtttgtacatcataaaaatcaatgtgtg |
447 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12338197 |
ctcccccgaagtctcatcacaagtgtttgtacatcataaaaatcaatgtgtg |
12338248 |
T |
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