View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_10 (Length: 321)
Name: NF16935_low_10
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 52721556 - 52721859
Alignment:
| Q |
1 |
cgtcaagaaacatcgaaaaggagtttcggtagaaaatgaacctactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcct |
100 |
Q |
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| T |
52721556 |
cgtcaagaaacatcgaaaaggagtttccgtagaaaatgaacctactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcct |
52721655 |
T |
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| Q |
101 |
cacacacgacaatacaggttagttaataaatcagggatatttttcttccaacaaataaataaatcagtgatcaaatgcacttattatatcatactcggtt |
200 |
Q |
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| T |
52721656 |
cacacacgacaatacaggttagttaataaatcagggatatttttcttccaaaaaataaataaatcagtgatcaaatgcacttagtatatcatactcggtt |
52721755 |
T |
|
| Q |
201 |
tcactacctgagaaacatagttataggaattaaggaaaatgctagaatatttgcagggtgtaatattaaacatatatgaagggtaggaaatcagacgacc |
300 |
Q |
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| T |
52721756 |
tcactacctgagaaacatagttataggaattaaggaaaatgctagaatatttgcagggtgtaatattaaacatataggaagggtaggaaatcagacgacc |
52721855 |
T |
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| Q |
301 |
ctta |
304 |
Q |
| |
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|||| |
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| T |
52721856 |
ctta |
52721859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 52712735 - 52712917
Alignment:
| Q |
1 |
cgtcaagaaacatcgaaaaggagtttcggtagaaaatgaacctactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcct |
100 |
Q |
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|||||||||||||| || |||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712735 |
cgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgaggttgagaccacacactctgatattattggcgctcgcaagcttcct |
52712834 |
T |
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| Q |
101 |
cacacacgacaatacaggttagttaataaatcagggatatttttcttccaacaaataaataaatcagtgatcaaatgcactta |
183 |
Q |
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| T |
52712835 |
cacacacgacaatacaggttagttaataaatcagggattttgttctttcaaaaaataaataaatcagtgatcaaatgcactta |
52712917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 52698920 - 52699038
Alignment:
| Q |
5 |
aagaaacatcgaaaaggagtttcggtagaaaatgaacctactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcctcaca |
104 |
Q |
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|||||||||||| |||||| || |||||||||||| || |||||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||| |
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| T |
52698920 |
aagaaacatcgaggaggagtctcagtagaaaatgaaactcctctctatgaggttgaaaccacatactctgatattattggtgctcgcaagcttccccaca |
52699019 |
T |
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| Q |
105 |
cacgacaatacaggttagt |
123 |
Q |
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| | |||||||||||||| |
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| T |
52699020 |
ctctccaatacaggttagt |
52699038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 52713112 - 52713187
Alignment:
| Q |
205 |
tacctgagaaacatagttataggaattaaggaaaatgctagaatatttgcagggtgtaatattaaacatatatgaag |
281 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||| |
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| T |
52713112 |
tacctgagaaacat-gttataggaattaaggaaaatgctagaatatttacagggtgtaattttagacatataggaag |
52713187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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