View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_12 (Length: 266)
Name: NF16935_low_12
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 34577285 - 34577036
Alignment:
| Q |
14 |
attagcagaaaaactactagagaaaagacactgtttctttctcaagatcacaatattcttgagatttcatcttgcaaggtttagtatcaataagcctttt |
113 |
Q |
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| T |
34577285 |
attagcagaaaaactactagagaaaagacactatatctttctcaagatcaca---ttcttgagatttcatcttgcaaggtttagtatcaataagcctttt |
34577189 |
T |
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| Q |
114 |
gacaacatctctccttgcaggacgcaaaattggaagcttaacagtgaacttagtagcaatcttttaatacatcttcaacacactttgataatgcaactct |
213 |
Q |
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| T |
34577188 |
gacaacatctctccttgcaggacgcaaaattggaagcttagcagtgaacttagtagcaatcttttaatacatcttcaacacactttgatgatgcaactct |
34577089 |
T |
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| Q |
214 |
atcatcaagaatgtttagtacactttcgcgatcacagaaattcgccataaccc |
266 |
Q |
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| T |
34577088 |
atcatcaagaatgtttagtacactttcgcgatcacagaaattcgccataaccc |
34577036 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 12061768 - 12061946
Alignment:
| Q |
76 |
gatttcatcttgcaaggtttagtatcaataagccttttgacaacatctctccttgcaggacgcaaaattggaagcttaacagtgaacttagtagcaatct |
175 |
Q |
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|||||| |||||||||||| || ||||| |||| | || |||||||||||| | | ||||||||| ||||||||||| ||| ||||| || | |||| |
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| T |
12061768 |
gatttcttcttgcaaggttcagaatcaacaagcatcttaacaacatctctcatagttggacgcaaagttggaagcttagtagtacacttaataccgatct |
12061867 |
T |
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| Q |
176 |
t-------ttaat-acatcttcaacacactttgataatgcaactctatcatcaagaatgtttagtacactttcgcgatc |
246 |
Q |
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| T |
12061868 |
tcaacactttaatcatatcttcgacacaatgtgttgatgcaactctaccatcaagaatgctgagtacactttcgcgatc |
12061946 |
T |
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