View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_14 (Length: 255)
Name: NF16935_low_14
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 47802789 - 47802690
Alignment:
| Q |
13 |
aatatgaaaaggcttaccacaaacccaagattctacagtatcaaaaaaggaatcatcctttccaacacaatcaggatgataagcttttccacagttcctg |
112 |
Q |
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| T |
47802789 |
aatatgaaaaggcttaccacaaacccaagattctacagtatcaaaaaaggaatcatcctttccaacacaatcagaatgataagcttttccacagttcctg |
47802690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 47802612 - 47802577
Alignment:
| Q |
202 |
gagttactcatgatcacagataacaagttgtccacc |
237 |
Q |
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| T |
47802612 |
gagttactcatgatcacagataacaagttgtccacc |
47802577 |
T |
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