View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_18 (Length: 239)
Name: NF16935_low_18
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 42116962 - 42117187
Alignment:
| Q |
18 |
actgcagactcttatcagtaaatatgatg---catcaaacgaggtaaaatgataagc-cttatacacttagtcatatgcccatctctgatagccttcatc |
113 |
Q |
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| T |
42116962 |
actgcagactcttatcagtaaatatgatgatgcatcaaacgaggtaaaatgataagctcttatacacttagtcatatgcccatctctgatagccttcatc |
42117061 |
T |
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| Q |
114 |
cctggttcactttcaagttccaaggctttggaatgatggtcgaggaaaacgcatatgagaatactggtacttggtgtcatattagtctaaggttgatcag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
42117062 |
cctggttcactttcaagttccaaggctttggaatgatggtcgaggaaaacgcatatgagaatgctggtacttggtgtcatattagtctaaggttgatcgg |
42117161 |
T |
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| Q |
214 |
gccgtaacccccgaaccaaagcgatc |
239 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42117162 |
gccgtaacccccgaaccaaagcgatc |
42117187 |
T |
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