View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16935_low_2 (Length: 527)
Name: NF16935_low_2
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Original strand, 10483530 - 10483994
Alignment:
| Q |
10 |
atatcaaatagagaatcagctaggagatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtggtgagactcagaactgaaaatcata |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10483530 |
atatcaaatagagaatcagctaggagatcaaggatgaggaaacaaaagcacttagatgaactttggtcacaagtggtgagactcagaactgaaaatcata |
10483629 |
T |
|
| Q |
110 |
accttgttgataaactaaaccatgtgtctgagtcacatgacaaagttgttcaagaaaatgcaagacttaaagaagaaacttttgatcttcgccaaatggt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10483630 |
accttgttgataaactaaaccatgtgtctgagtcacatgacaaagttgttcaagagaatgcaagacttaaggaagaaacttttgatcttcgccaaatggt |
10483729 |
T |
|
| Q |
210 |
agctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10483730 |
agctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaa |
10483829 |
T |
|
| Q |
310 |
attcatgattgagatgacactattttcatgtttccattataacgatgttgcttcttttaaattttctatgatccatttacttgtccattcatttggacaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10483830 |
attcatgattgagatgacactattttcatgtttccattataacgatgttgcttcttttaaattttctatgatccatttacttgtccattcatttggacaa |
10483929 |
T |
|
| Q |
410 |
gcatgagttttagaagcataaatatatgaaataaaagctttagatattgatgttcattacttgactt |
476 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10483930 |
gtatgagttttagaagcataa--atatgaaataaaagctttagatattgatgttcattacttgactt |
10483994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 4952142 - 4951832
Alignment:
| Q |
10 |
atatcaaatagagaatcagctaggagatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtggtgagactcagaactgaaaatcata |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
4952142 |
atatcaaacagagaatcagctaggagatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcaca |
4952043 |
T |
|
| Q |
110 |
accttgttgataaactaaaccatgtgtctgagtcacatgacaaagttgttcaagaaaatgcaagacttaaagaagaaacttttgatcttcgccaaatggt |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4952042 |
accttgttgacaaactaaaccatgtgtctgagtcacatgacacagttgttcaagagaatgcacgacttaaagaagaaacttttgatcttcgtcaaatggt |
4951943 |
T |
|
| Q |
210 |
agctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4951942 |
agctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaaga---tgattcctctaaa |
4951846 |
T |
|
| Q |
310 |
attcatgattgaga |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4951845 |
attcatgattgaga |
4951832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 4951736 - 4951645
Alignment:
| Q |
385 |
tttacttgtccat--tcatttggacaagcatgagttttagaagcataaatatatgaaataaaagct----ttagatattgatgttcattacttgac |
474 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
4951736 |
tttacttgtccatattcatt-ggacaagtatgagttttagaagcatatatat---aaataaaagctttaattagatgttgatgttcattacttgac |
4951645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University